Results 41 - 60 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29396 | 5' | -63.8 | NC_006151.1 | + | 91746 | 0.66 | 0.572524 |
Target: 5'- cGGCgGGCGaGCGGGCUcggGCgggcGGUGUgcgccAGAc -3' miRNA: 3'- -CCGgCUGC-CGCCCGG---CGa---CCACG-----UCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 92566 | 0.66 | 0.572524 |
Target: 5'- uGGCCGAgucgcUGGaGGGCCGCgaGGUGg--- -3' miRNA: 3'- -CCGGCU-----GCCgCCCGGCGa-CCACgucu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 126135 | 0.66 | 0.572524 |
Target: 5'- gGGgCGcuCGccauCGGGCUGCUGGUGCuGGc -3' miRNA: 3'- -CCgGCu-GCc---GCCCGGCGACCACGuCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 50636 | 0.66 | 0.572524 |
Target: 5'- cGCCu-CGGCGacGGCCGC-GG-GCGGAc -3' miRNA: 3'- cCGGcuGCCGC--CCGGCGaCCaCGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 75894 | 0.66 | 0.572524 |
Target: 5'- cGCgCGACGGCcaccgaGGG-CGC-GGUGCAGu -3' miRNA: 3'- cCG-GCUGCCG------CCCgGCGaCCACGUCu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 133627 | 0.66 | 0.562934 |
Target: 5'- gGGUcgCGGCGGCcgGGGCgGUgguccgGGUGCgAGAg -3' miRNA: 3'- -CCG--GCUGCCG--CCCGgCGa-----CCACG-UCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 56195 | 0.66 | 0.5572 |
Target: 5'- uGCCGcCGGUGGcGCUGCcgcaccgccuggcccUGGUGCGc- -3' miRNA: 3'- cCGGCuGCCGCC-CGGCG---------------ACCACGUcu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 90748 | 0.66 | 0.525061 |
Target: 5'- cGCCcucgggGGCGGCGGGCaCGgUGGcggggucgGCGGGc -3' miRNA: 3'- cCGG------CUGCCGCCCG-GCgACCa-------CGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 92180 | 0.66 | 0.525061 |
Target: 5'- cGCCGACGGCgacgGGGCCGCcGacGCGc- -3' miRNA: 3'- cCGGCUGCCG----CCCGGCGaCcaCGUcu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 26286 | 0.66 | 0.534446 |
Target: 5'- gGGCgGACGGUGGGgUGgggggGGUGgGGGg -3' miRNA: 3'- -CCGgCUGCCGCCCgGCga---CCACgUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 31688 | 0.66 | 0.534446 |
Target: 5'- gGGCCGcCGaGCcGGCCGCgccauUGGgcgccggGCGGAa -3' miRNA: 3'- -CCGGCuGC-CGcCCGGCG-----ACCa------CGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 117032 | 0.66 | 0.534446 |
Target: 5'- gGGCCG-CaGGCGGuaccaGCCgaaGCUGG-GCAGGu -3' miRNA: 3'- -CCGGCuG-CCGCC-----CGG---CGACCaCGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 40518 | 0.66 | 0.534446 |
Target: 5'- cGGCCGgagguggcuGCGGCGGcGgCGgaGGUGgCGGc -3' miRNA: 3'- -CCGGC---------UGCCGCC-CgGCgaCCAC-GUCu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 52368 | 0.66 | 0.534446 |
Target: 5'- cGCCGGCGcGCccccgGGGcCCGCgGGggcgGCGGGc -3' miRNA: 3'- cCGGCUGC-CG-----CCC-GGCGaCCa---CGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 3245 | 0.66 | 0.54389 |
Target: 5'- cGGCgCGGCGGCGGagcggggcGCCGC-GGcgcGCGGc -3' miRNA: 3'- -CCG-GCUGCCGCC--------CGGCGaCCa--CGUCu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 102122 | 0.66 | 0.547682 |
Target: 5'- gGGCCGgagccuguuccccggGCGcGcCGGGCUGCUGGaGCGc- -3' miRNA: 3'- -CCGGC---------------UGC-C-GCCCGGCGACCaCGUcu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 5546 | 0.66 | 0.553387 |
Target: 5'- cGCCucgcGGCGGCGGGCUcgucgagcagggGCUcgcGGUGCuGGu -3' miRNA: 3'- cCGG----CUGCCGCCCGG------------CGA---CCACGuCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 56297 | 0.66 | 0.553387 |
Target: 5'- cGGCgGA-GGCGGacGCCGCgcGGUGCcuGAg -3' miRNA: 3'- -CCGgCUgCCGCC--CGGCGa-CCACGu-CU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 95394 | 0.66 | 0.553387 |
Target: 5'- cGCCG--GGCGuGGcCCGCUGcacgaucuccGUGCAGAg -3' miRNA: 3'- cCGGCugCCGC-CC-GGCGAC----------CACGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 129217 | 0.66 | 0.553387 |
Target: 5'- gGGCCGcCaGCaGGCaGCUGGcGCGGGu -3' miRNA: 3'- -CCGGCuGcCGcCCGgCGACCaCGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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