miRNA display CGI


Results 101 - 120 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29396 5' -63.8 NC_006151.1 + 38177 0.67 0.470221
Target:  5'- cGCCcGCaccGUGGcGCCGCUGGUGCGc- -3'
miRNA:   3'- cCGGcUGc--CGCC-CGGCGACCACGUcu -5'
29396 5' -63.8 NC_006151.1 + 118883 0.67 0.470221
Target:  5'- cGGCgCGGCGGCGacgcGGCCGCcGGcgGCcucGAg -3'
miRNA:   3'- -CCG-GCUGCCGC----CCGGCGaCCa-CGu--CU- -5'
29396 5' -63.8 NC_006151.1 + 115563 0.67 0.470221
Target:  5'- cGCCcGCgGGCGGGCgCGC-GG-GCAGGu -3'
miRNA:   3'- cCGGcUG-CCGCCCG-GCGaCCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 107048 0.67 0.470221
Target:  5'- uGGCCGGCGaGCcGGCCugccucguGCUGGUGgAc- -3'
miRNA:   3'- -CCGGCUGC-CGcCCGG--------CGACCACgUcu -5'
29396 5' -63.8 NC_006151.1 + 97360 0.67 0.470221
Target:  5'- aGGCCGcggcgGCGGCGGGC-GCg---GCGGGg -3'
miRNA:   3'- -CCGGC-----UGCCGCCCGgCGaccaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 131102 0.67 0.497301
Target:  5'- cGUCGGCGGgGGGCCcgGCcgcGGcGCGGGa -3'
miRNA:   3'- cCGGCUGCCgCCCGG--CGa--CCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 10935 0.67 0.497301
Target:  5'- cGCCGAgGGUGGGCgCGCguguccGUGUgAGAg -3'
miRNA:   3'- cCGGCUgCCGCCCG-GCGac----CACG-UCU- -5'
29396 5' -63.8 NC_006151.1 + 40567 0.66 0.525061
Target:  5'- cGG-CGGCGGC-GGCCGCg---GCGGAg -3'
miRNA:   3'- -CCgGCUGCCGcCCGGCGaccaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 137908 0.66 0.525061
Target:  5'- aGGUCGACGGCGgcGGCUGCcacGG-GCGc- -3'
miRNA:   3'- -CCGGCUGCCGC--CCGGCGa--CCaCGUcu -5'
29396 5' -63.8 NC_006151.1 + 125385 0.67 0.515739
Target:  5'- gGGCCGcAUcGC-GGCCGcCUGGUGCGa- -3'
miRNA:   3'- -CCGGC-UGcCGcCCGGC-GACCACGUcu -5'
29396 5' -63.8 NC_006151.1 + 6290 0.67 0.515739
Target:  5'- cGGCCG-CGGCGgcGGCCGCcaGGaGCuGGc -3'
miRNA:   3'- -CCGGCuGCCGC--CCGGCGa-CCaCGuCU- -5'
29396 5' -63.8 NC_006151.1 + 55225 0.67 0.515739
Target:  5'- gGGCaCcACGGCGccGGCgCGCagccGGUGCAGGa -3'
miRNA:   3'- -CCG-GcUGCCGC--CCG-GCGa---CCACGUCU- -5'
29396 5' -63.8 NC_006151.1 + 2385 0.67 0.515739
Target:  5'- cGGCCGGCaGGCccucgGGGCCGC-GGaGCu-- -3'
miRNA:   3'- -CCGGCUG-CCG-----CCCGGCGaCCaCGucu -5'
29396 5' -63.8 NC_006151.1 + 26216 0.67 0.515739
Target:  5'- aGGuUCGAgCGGCGGGCCGCc-GUGUuuauuGAg -3'
miRNA:   3'- -CC-GGCU-GCCGCCCGGCGacCACGu----CU- -5'
29396 5' -63.8 NC_006151.1 + 84627 0.67 0.512955
Target:  5'- cGGCCGccGCGGCGcuggacaacgccauGGCCGCgGGcGCGc- -3'
miRNA:   3'- -CCGGC--UGCCGC--------------CCGGCGaCCaCGUcu -5'
29396 5' -63.8 NC_006151.1 + 104003 0.67 0.506484
Target:  5'- cGGCCGuggaGGCGcGCCGCgcg-GCGGAg -3'
miRNA:   3'- -CCGGCug--CCGCcCGGCGaccaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 76661 0.67 0.506484
Target:  5'- uGCgGGCGcguguGCGcGGUCGCUGGggaGCAGGg -3'
miRNA:   3'- cCGgCUGC-----CGC-CCGGCGACCa--CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 39931 0.67 0.506484
Target:  5'- -cCCGACGcCGaGGCCGCcccgcUGGUGCuGAc -3'
miRNA:   3'- ccGGCUGCcGC-CCGGCG-----ACCACGuCU- -5'
29396 5' -63.8 NC_006151.1 + 33203 0.67 0.506484
Target:  5'- cGGCCGGCGcccccggagcacGCGGGgCGCcccGGcggGCGGGa -3'
miRNA:   3'- -CCGGCUGC------------CGCCCgGCGa--CCa--CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 139643 0.67 0.497301
Target:  5'- cGCCGGCGcGgGGGUCGCg---GCGGGc -3'
miRNA:   3'- cCGGCUGC-CgCCCGGCGaccaCGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.