Results 121 - 140 of 154 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29396 | 5' | -63.8 | NC_006151.1 | + | 69699 | 0.68 | 0.443911 |
Target: 5'- cGUCGAUGGUGGccGCCGCcGGggGCAGc -3' miRNA: 3'- cCGGCUGCCGCC--CGGCGaCCa-CGUCu -5' |
|||||||
29396 | 5' | -63.8 | NC_006151.1 | + | 133396 | 0.68 | 0.443911 |
Target: 5'- cGGCCGGggcCGaGCGGGCgGUcuUGGccGCGGAc -3' miRNA: 3'- -CCGGCU---GC-CGCCCGgCG--ACCa-CGUCU- -5' |
|||||||
29396 | 5' | -63.8 | NC_006151.1 | + | 4006 | 0.67 | 0.479166 |
Target: 5'- uGGCCGG-GGCgaagaGGGCCGC-GGcGUAGGu -3' miRNA: 3'- -CCGGCUgCCG-----CCCGGCGaCCaCGUCU- -5' |
|||||||
29396 | 5' | -63.8 | NC_006151.1 | + | 61761 | 0.67 | 0.479166 |
Target: 5'- cGGUCG-CGG-GGGCCG-UGGUGCu-- -3' miRNA: 3'- -CCGGCuGCCgCCCGGCgACCACGucu -5' |
|||||||
29396 | 5' | -63.8 | NC_006151.1 | + | 119117 | 0.67 | 0.479166 |
Target: 5'- aGCCGcGCGGCcggccucgugGGGgCGCUGGUGUu-- -3' miRNA: 3'- cCGGC-UGCCG----------CCCgGCGACCACGucu -5' |
|||||||
29396 | 5' | -63.8 | NC_006151.1 | + | 2385 | 0.67 | 0.515739 |
Target: 5'- cGGCCGGCaGGCccucgGGGCCGC-GGaGCu-- -3' miRNA: 3'- -CCGGCUG-CCG-----CCCGGCGaCCaCGucu -5' |
|||||||
29396 | 5' | -63.8 | NC_006151.1 | + | 26216 | 0.67 | 0.515739 |
Target: 5'- aGGuUCGAgCGGCGGGCCGCc-GUGUuuauuGAg -3' miRNA: 3'- -CC-GGCU-GCCGCCCGGCGacCACGu----CU- -5' |
|||||||
29396 | 5' | -63.8 | NC_006151.1 | + | 84627 | 0.67 | 0.512955 |
Target: 5'- cGGCCGccGCGGCGcuggacaacgccauGGCCGCgGGcGCGc- -3' miRNA: 3'- -CCGGC--UGCCGC--------------CCGGCGaCCaCGUcu -5' |
|||||||
29396 | 5' | -63.8 | NC_006151.1 | + | 104003 | 0.67 | 0.506484 |
Target: 5'- cGGCCGuggaGGCGcGCCGCgcg-GCGGAg -3' miRNA: 3'- -CCGGCug--CCGCcCGGCGaccaCGUCU- -5' |
|||||||
29396 | 5' | -63.8 | NC_006151.1 | + | 76661 | 0.67 | 0.506484 |
Target: 5'- uGCgGGCGcguguGCGcGGUCGCUGGggaGCAGGg -3' miRNA: 3'- cCGgCUGC-----CGC-CCGGCGACCa--CGUCU- -5' |
|||||||
29396 | 5' | -63.8 | NC_006151.1 | + | 39931 | 0.67 | 0.506484 |
Target: 5'- -cCCGACGcCGaGGCCGCcccgcUGGUGCuGAc -3' miRNA: 3'- ccGGCUGCcGC-CCGGCG-----ACCACGuCU- -5' |
|||||||
29396 | 5' | -63.8 | NC_006151.1 | + | 33203 | 0.67 | 0.506484 |
Target: 5'- cGGCCGGCGcccccggagcacGCGGGgCGCcccGGcggGCGGGa -3' miRNA: 3'- -CCGGCUGC------------CGCCCgGCGa--CCa--CGUCU- -5' |
|||||||
29396 | 5' | -63.8 | NC_006151.1 | + | 139643 | 0.67 | 0.497301 |
Target: 5'- cGCCGGCGcGgGGGUCGCg---GCGGGc -3' miRNA: 3'- cCGGCUGC-CgCCCGGCGaccaCGUCU- -5' |
|||||||
29396 | 5' | -63.8 | NC_006151.1 | + | 10935 | 0.67 | 0.497301 |
Target: 5'- cGCCGAgGGUGGGCgCGCguguccGUGUgAGAg -3' miRNA: 3'- cCGGCUgCCGCCCG-GCGac----CACG-UCU- -5' |
|||||||
29396 | 5' | -63.8 | NC_006151.1 | + | 131102 | 0.67 | 0.497301 |
Target: 5'- cGUCGGCGGgGGGCCcgGCcgcGGcGCGGGa -3' miRNA: 3'- cCGGCUGCCgCCCGG--CGa--CCaCGUCU- -5' |
|||||||
29396 | 5' | -63.8 | NC_006151.1 | + | 4208 | 0.67 | 0.497301 |
Target: 5'- gGGCCcgagGGCGGcCGGGgCGCgggcgGGcGCGGGc -3' miRNA: 3'- -CCGG----CUGCC-GCCCgGCGa----CCaCGUCU- -5' |
|||||||
29396 | 5' | -63.8 | NC_006151.1 | + | 39891 | 0.67 | 0.491828 |
Target: 5'- cGGCCGaguugcgcgccuucuGCGccGCGGGCUGCUGGaGCc-- -3' miRNA: 3'- -CCGGC---------------UGC--CGCCCGGCGACCaCGucu -5' |
|||||||
29396 | 5' | -63.8 | NC_006151.1 | + | 96817 | 0.67 | 0.488194 |
Target: 5'- gGGCUuuuaGCGGCGGGcCCGCcaaUGGgggaaaggGCGGGg -3' miRNA: 3'- -CCGGc---UGCCGCCC-GGCG---ACCa-------CGUCU- -5' |
|||||||
29396 | 5' | -63.8 | NC_006151.1 | + | 113104 | 0.67 | 0.488194 |
Target: 5'- -aCCGGgGGCgGGGCCGC-GGacGCGGAc -3' miRNA: 3'- ccGGCUgCCG-CCCGGCGaCCa-CGUCU- -5' |
|||||||
29396 | 5' | -63.8 | NC_006151.1 | + | 3131 | 0.67 | 0.485477 |
Target: 5'- aGGCCGGgcgcggggcgcccuCGGCGGGCUc--GGcGCAGAg -3' miRNA: 3'- -CCGGCU--------------GCCGCCCGGcgaCCaCGUCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home