miRNA display CGI


Results 61 - 80 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29398 5' -62.7 NC_006151.1 + 107703 0.69 0.420033
Target:  5'- ----gCCCgCCGcCGGCAccaaGGCCGCCgCGGc -3'
miRNA:   3'- gacaaGGG-GGC-GCCGU----UCGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 61431 0.69 0.428464
Target:  5'- -cGgcCCCgCCGCGGCGc-CCGCCCGc -3'
miRNA:   3'- gaCaaGGG-GGCGCCGUucGGCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 87456 0.69 0.423394
Target:  5'- -cGgccgCCCCCgcuccggcuccagcaGCGGC-AGCCGCCgCGGc -3'
miRNA:   3'- gaCaa--GGGGG---------------CGCCGuUCGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 111299 0.68 0.481042
Target:  5'- cCUGg-CCCacgaaCGCGGC-GGCCgcguGCCCGGg -3'
miRNA:   3'- -GACaaGGGg----GCGCCGuUCGG----CGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 99130 0.68 0.505708
Target:  5'- gCUGga-CCCCGgGGCGcaggccgugcacguGGCCGCCgccgCGGa -3'
miRNA:   3'- -GACaagGGGGCgCCGU--------------UCGGCGG----GCC- -5'
29398 5' -62.7 NC_006151.1 + 107548 0.68 0.481042
Target:  5'- -----gCCCCGcCGGCGccGCCGCCCGc -3'
miRNA:   3'- gacaagGGGGC-GCCGUu-CGGCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 81662 0.68 0.520579
Target:  5'- --cUUCCCCCgcacggaGCGGCGguacgccucggcgacGGUCGCCCGc -3'
miRNA:   3'- gacAAGGGGG-------CGCCGU---------------UCGGCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 40158 0.68 0.508483
Target:  5'- -----gCCCCGCGGC---CCGCUCGGg -3'
miRNA:   3'- gacaagGGGGCGCCGuucGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 61806 0.68 0.50294
Target:  5'- -cGUUCCagCCCagcguggugcucuacGCGGCGucgacgguGGCCGCcCCGGg -3'
miRNA:   3'- gaCAAGG--GGG---------------CGCCGU--------UCGGCG-GGCC- -5'
29398 5' -62.7 NC_006151.1 + 124835 0.68 0.481042
Target:  5'- aCUGggCCCCCaagacGCGGCGcguguGCaGCCUGGc -3'
miRNA:   3'- -GACaaGGGGG-----CGCCGUu----CGgCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 37233 0.68 0.490111
Target:  5'- ---cUCCCCgGCcccGGCcccgGAGcCCGCCCGGc -3'
miRNA:   3'- gacaAGGGGgCG---CCG----UUC-GGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 113751 0.68 0.499259
Target:  5'- gCUGUUCCCgCCGaaGCccacucccGAGCCGCCUu- -3'
miRNA:   3'- -GACAAGGG-GGCgcCG--------UUCGGCGGGcc -5'
29398 5' -62.7 NC_006151.1 + 10552 0.68 0.480139
Target:  5'- -cGUUCCgCCCggcgcccaauggcGCGGCcggcucGGCgGCCCGGc -3'
miRNA:   3'- gaCAAGG-GGG-------------CGCCGu-----UCGgCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 6855 0.68 0.499259
Target:  5'- ----gCCCCCGCGGCG-GCCaucuuGCCCc- -3'
miRNA:   3'- gacaaGGGGGCGCCGUuCGG-----CGGGcc -5'
29398 5' -62.7 NC_006151.1 + 117572 0.68 0.499259
Target:  5'- -gGgcUCCCCGCGGaggauGGGCCGCgUGGc -3'
miRNA:   3'- gaCaaGGGGGCGCCg----UUCGGCGgGCC- -5'
29398 5' -62.7 NC_006151.1 + 46715 0.68 0.508483
Target:  5'- aUGgugCCUCgGgGGCcgGGGCCGgCCCGGg -3'
miRNA:   3'- gACaa-GGGGgCgCCG--UUCGGC-GGGCC- -5'
29398 5' -62.7 NC_006151.1 + 60584 0.68 0.508483
Target:  5'- gCUG-UCCCCCGCcGCccccGCCGCCUc- -3'
miRNA:   3'- -GACaAGGGGGCGcCGuu--CGGCGGGcc -5'
29398 5' -62.7 NC_006151.1 + 102131 0.68 0.472055
Target:  5'- cCUGUUCCCCgggCGCGcCGGGCUGCUgGa -3'
miRNA:   3'- -GACAAGGGG---GCGCcGUUCGGCGGgCc -5'
29398 5' -62.7 NC_006151.1 + 113872 0.68 0.472055
Target:  5'- -cGgcggCUCCUGCGGCGcaagucgucGGCCGCgCGGc -3'
miRNA:   3'- gaCaa--GGGGGCGCCGU---------UCGGCGgGCC- -5'
29398 5' -62.7 NC_006151.1 + 31223 0.68 0.481042
Target:  5'- -cGggCCCCC--GGCcGGCCGgCCCGGc -3'
miRNA:   3'- gaCaaGGGGGcgCCGuUCGGC-GGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.