miRNA display CGI


Results 81 - 100 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29398 5' -62.7 NC_006151.1 + 46715 0.68 0.508483
Target:  5'- aUGgugCCUCgGgGGCcgGGGCCGgCCCGGg -3'
miRNA:   3'- gACaa-GGGGgCgCCG--UUCGGC-GGGCC- -5'
29398 5' -62.7 NC_006151.1 + 50614 0.68 0.517777
Target:  5'- -cGcgCCgCCGCGGCAGcguGCaCGCCuCGGc -3'
miRNA:   3'- gaCaaGGgGGCGCCGUU---CG-GCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 55479 0.68 0.517777
Target:  5'- -cGcgCCCggcgCCGCGGaCGgccAGCCGCCgCGGg -3'
miRNA:   3'- gaCaaGGG----GGCGCC-GU---UCGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 124835 0.68 0.481042
Target:  5'- aCUGggCCCCCaagacGCGGCGcguguGCaGCCUGGc -3'
miRNA:   3'- -GACaaGGGGG-----CGCCGUu----CGgCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 102131 0.68 0.472055
Target:  5'- cCUGUUCCCCgggCGCGcCGGGCUGCUgGa -3'
miRNA:   3'- -GACAAGGGG---GCGCcGUUCGGCGGgCc -5'
29398 5' -62.7 NC_006151.1 + 113872 0.68 0.472055
Target:  5'- -cGgcggCUCCUGCGGCGcaagucgucGGCCGCgCGGc -3'
miRNA:   3'- gaCaa--GGGGGCGCCGU---------UCGGCGgGCC- -5'
29398 5' -62.7 NC_006151.1 + 10552 0.68 0.480139
Target:  5'- -cGUUCCgCCCggcgcccaauggcGCGGCcggcucGGCgGCCCGGc -3'
miRNA:   3'- gaCAAGG-GGG-------------CGCCGu-----UCGgCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 81662 0.68 0.520579
Target:  5'- --cUUCCCCCgcacggaGCGGCGguacgccucggcgacGGUCGCCCGc -3'
miRNA:   3'- gacAAGGGGG-------CGCCGU---------------UCGGCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 58079 0.68 0.517777
Target:  5'- -cGcgCCCUCGCgGGCGAGCUcggGCCCcaGGa -3'
miRNA:   3'- gaCaaGGGGGCG-CCGUUCGG---CGGG--CC- -5'
29398 5' -62.7 NC_006151.1 + 4388 0.67 0.555579
Target:  5'- ---cUCCCcggcgcggggguCCGCGGC--GCgGCCCGGg -3'
miRNA:   3'- gacaAGGG------------GGCGCCGuuCGgCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 141687 0.67 0.555579
Target:  5'- uCUGccUCCCaCgGCGGCuGGCggcggacgcggUGCCCGGg -3'
miRNA:   3'- -GACa-AGGG-GgCGCCGuUCG-----------GCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 123769 0.67 0.555579
Target:  5'- -cGggCCCCgGgGGCAu-CgGCCCGGg -3'
miRNA:   3'- gaCaaGGGGgCgCCGUucGgCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 64855 0.67 0.555579
Target:  5'- -aGggCCUCgGCGGaGGGCCgcuGCCCGGc -3'
miRNA:   3'- gaCaaGGGGgCGCCgUUCGG---CGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 141761 0.67 0.554623
Target:  5'- -cGcgCCCCgGUGGCGucGCCGguucuguCCCGGg -3'
miRNA:   3'- gaCaaGGGGgCGCCGUu-CGGC-------GGGCC- -5'
29398 5' -62.7 NC_006151.1 + 21557 0.67 0.554623
Target:  5'- cCUGggCCUCgGCGaGCccgccgaGGGCCGCgCGGg -3'
miRNA:   3'- -GACaaGGGGgCGC-CG-------UUCGGCGgGCC- -5'
29398 5' -62.7 NC_006151.1 + 8289 0.67 0.549852
Target:  5'- gUG-UCCCCgCGCgGGCGccgcgucccgccccgAGCC-CCCGGg -3'
miRNA:   3'- gACaAGGGG-GCG-CCGU---------------UCGGcGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 136264 0.67 0.546044
Target:  5'- cCUcUUCCaCCCGCGGCcGGCCuacgaccugcggGCCCu- -3'
miRNA:   3'- -GAcAAGG-GGGCGCCGuUCGG------------CGGGcc -5'
29398 5' -62.7 NC_006151.1 + 85755 0.67 0.546044
Target:  5'- ---cUUCCCCG-GGCuGGCCGCgCUGGc -3'
miRNA:   3'- gacaAGGGGGCgCCGuUCGGCG-GGCC- -5'
29398 5' -62.7 NC_006151.1 + 50719 0.67 0.546044
Target:  5'- -cGgccgCCCCgGCGGUccAGCUGCcCCGGc -3'
miRNA:   3'- gaCaa--GGGGgCGCCGu-UCGGCG-GGCC- -5'
29398 5' -62.7 NC_006151.1 + 12668 0.67 0.546044
Target:  5'- ----gCCgCCGCGGCcgcAGCCGCCgCGa -3'
miRNA:   3'- gacaaGGgGGCGCCGu--UCGGCGG-GCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.