miRNA display CGI


Results 121 - 140 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29398 5' -62.7 NC_006151.1 + 88387 0.67 0.536563
Target:  5'- -aGcgCgUCCGCGGCGuccgcGGCCgcgagGCCCGGg -3'
miRNA:   3'- gaCaaGgGGGCGCCGU-----UCGG-----CGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 134794 0.67 0.536563
Target:  5'- cCUGUgaggCCGCGGCGGcCCGCgCCGGa -3'
miRNA:   3'- -GACAagggGGCGCCGUUcGGCG-GGCC- -5'
29398 5' -62.7 NC_006151.1 + 77889 0.66 0.6136
Target:  5'- gUGcgCCCCCcgcucaGCGGCGAgacGCgGCCCa- -3'
miRNA:   3'- gACaaGGGGG------CGCCGUU---CGgCGGGcc -5'
29398 5' -62.7 NC_006151.1 + 39957 0.66 0.633108
Target:  5'- gCUGa--CCCCG-GGCGccgucGCCGCCgCGGg -3'
miRNA:   3'- -GACaagGGGGCgCCGUu----CGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 71935 0.66 0.633108
Target:  5'- aUGUUCagcaCCaGCGaGCGcguGGCCGCCuCGGc -3'
miRNA:   3'- gACAAGg---GGgCGC-CGU---UCGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 13430 0.66 0.633108
Target:  5'- -cGcgUCCCCGgGGCccgcauuGGCCGguCCCGGa -3'
miRNA:   3'- gaCaaGGGGGCgCCGu------UCGGC--GGGCC- -5'
29398 5' -62.7 NC_006151.1 + 15128 0.66 0.633108
Target:  5'- ---cUCUUUCGCGGCAucGCCGUCuCGGc -3'
miRNA:   3'- gacaAGGGGGCGCCGUu-CGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 134406 0.66 0.633108
Target:  5'- ---aUCCCCUGCccgcGCGAGCUGgugcugcccCCCGGg -3'
miRNA:   3'- gacaAGGGGGCGc---CGUUCGGC---------GGGCC- -5'
29398 5' -62.7 NC_006151.1 + 44167 0.66 0.642864
Target:  5'- -cGUgCCCCUGgGaGCAccgcgggucGCCGUCCGGg -3'
miRNA:   3'- gaCAaGGGGGCgC-CGUu--------CGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 79086 0.66 0.642864
Target:  5'- ----gCCCCCGCGcgcGCGAGCgagCGCCCc- -3'
miRNA:   3'- gacaaGGGGGCGC---CGUUCG---GCGGGcc -5'
29398 5' -62.7 NC_006151.1 + 56493 0.66 0.6136
Target:  5'- gCUGUcggcCCCCCG-GGCc--CCGCCCGu -3'
miRNA:   3'- -GACAa---GGGGGCgCCGuucGGCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 53978 0.66 0.6136
Target:  5'- -gGcgCCUCCgcgggcgucGCGGCGAGCU-CCCGGa -3'
miRNA:   3'- gaCaaGGGGG---------CGCCGUUCGGcGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 21452 0.66 0.582514
Target:  5'- gUGgcCCCCgGCGGCGuggucccgcgucGCCGgCUCGGg -3'
miRNA:   3'- gACaaGGGGgCGCCGUu-----------CGGC-GGGCC- -5'
29398 5' -62.7 NC_006151.1 + 133303 0.66 0.583482
Target:  5'- -gGUUCUCCCcggggGCGGCccgugucGAGgCGCgCCGGg -3'
miRNA:   3'- gaCAAGGGGG-----CGCCG-------UUCgGCG-GGCC- -5'
29398 5' -62.7 NC_006151.1 + 77520 0.66 0.58445
Target:  5'- gCUGgcgcgCCUcggCCGCGcGUggGCCGCCCc- -3'
miRNA:   3'- -GACaa---GGG---GGCGC-CGuuCGGCGGGcc -5'
29398 5' -62.7 NC_006151.1 + 19285 0.66 0.603862
Target:  5'- -gGggCCCaCCGgGGCcAGCgGCgCGGg -3'
miRNA:   3'- gaCaaGGG-GGCgCCGuUCGgCGgGCC- -5'
29398 5' -62.7 NC_006151.1 + 81903 0.66 0.603862
Target:  5'- -cGcgCCggUCGCGGCGcGCCGCCuCGGa -3'
miRNA:   3'- gaCaaGGg-GGCGCCGUuCGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 101930 0.66 0.603862
Target:  5'- ----gCCCCCGUGGCcGGCgaGCCaGGa -3'
miRNA:   3'- gacaaGGGGGCGCCGuUCGg-CGGgCC- -5'
29398 5' -62.7 NC_006151.1 + 4786 0.66 0.603862
Target:  5'- -cGggCCCggCCGCGGCGcgguagcgGGCCgcgGCCUGGc -3'
miRNA:   3'- gaCaaGGG--GGCGCCGU--------UCGG---CGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 15902 0.66 0.603862
Target:  5'- -cGcgCCCCgaCGCGGCccgccGCCGCCCc- -3'
miRNA:   3'- gaCaaGGGG--GCGCCGuu---CGGCGGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.