miRNA display CGI


Results 81 - 100 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29398 5' -62.7 NC_006151.1 + 138591 0.68 0.508483
Target:  5'- ----aCCCCgucguguaCGCGGCGcuGCCGCUCGGc -3'
miRNA:   3'- gacaaGGGG--------GCGCCGUu-CGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 46715 0.68 0.508483
Target:  5'- aUGgugCCUCgGgGGCcgGGGCCGgCCCGGg -3'
miRNA:   3'- gACaa-GGGGgCgCCG--UUCGGC-GGGCC- -5'
29398 5' -62.7 NC_006151.1 + 128033 0.68 0.514982
Target:  5'- uCUGcgaCgCCCGCGGCAgcggcggcagcggcGGCUGCgCGGg -3'
miRNA:   3'- -GACaa-GgGGGCGCCGU--------------UCGGCGgGCC- -5'
29398 5' -62.7 NC_006151.1 + 55479 0.68 0.517777
Target:  5'- -cGcgCCCggcgCCGCGGaCGgccAGCCGCCgCGGg -3'
miRNA:   3'- gaCaaGGG----GGCGCC-GU---UCGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 38217 0.68 0.517777
Target:  5'- -gGggCCCgCGCccGCgAGGCCGCCUGGa -3'
miRNA:   3'- gaCaaGGGgGCGc-CG-UUCGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 58079 0.68 0.517777
Target:  5'- -cGcgCCCUCGCgGGCGAGCUcggGCCCcaGGa -3'
miRNA:   3'- gaCaaGGGGGCG-CCGUUCGG---CGGG--CC- -5'
29398 5' -62.7 NC_006151.1 + 31758 0.68 0.517777
Target:  5'- -cGcgCCUgCgGCGGCGGGCgCGCgCCGGg -3'
miRNA:   3'- gaCaaGGGgG-CGCCGUUCG-GCG-GGCC- -5'
29398 5' -62.7 NC_006151.1 + 50614 0.68 0.517777
Target:  5'- -cGcgCCgCCGCGGCAGcguGCaCGCCuCGGc -3'
miRNA:   3'- gaCaaGGgGGCGCCGUU---CG-GCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 81662 0.68 0.520579
Target:  5'- --cUUCCCCCgcacggaGCGGCGguacgccucggcgacGGUCGCCCGc -3'
miRNA:   3'- gacAAGGGGG-------CGCCGU---------------UCGGCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 81363 0.67 0.527139
Target:  5'- -gGggCCCCgGCGggcgccagcGCGAGCCGCgCCGcGg -3'
miRNA:   3'- gaCaaGGGGgCGC---------CGUUCGGCG-GGC-C- -5'
29398 5' -62.7 NC_006151.1 + 13659 0.67 0.527139
Target:  5'- -----aCCCCGCGGCAc-CCGCcuCCGGg -3'
miRNA:   3'- gacaagGGGGCGCCGUucGGCG--GGCC- -5'
29398 5' -62.7 NC_006151.1 + 13378 0.67 0.527139
Target:  5'- -----aCCCCGCGGCAc-CCGCcuCCGGg -3'
miRNA:   3'- gacaagGGGGCGCCGUucGGCG--GGCC- -5'
29398 5' -62.7 NC_006151.1 + 125583 0.67 0.527139
Target:  5'- -cGUgCCCggcgagCGCGGCAcgugcuacAGCCGCCCGc -3'
miRNA:   3'- gaCAaGGGg-----GCGCCGU--------UCGGCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 36481 0.67 0.527139
Target:  5'- aUGgUCCCCCGCgaGGgGGGaCCcggucggugaGCCCGGg -3'
miRNA:   3'- gACaAGGGGGCG--CCgUUC-GG----------CGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 115876 0.67 0.527139
Target:  5'- ----aCCCCCGCGuGCAcaaaguagAGCCGCUCc- -3'
miRNA:   3'- gacaaGGGGGCGC-CGU--------UCGGCGGGcc -5'
29398 5' -62.7 NC_006151.1 + 18530 0.67 0.530901
Target:  5'- -cGUccCCgCCCGCgucggcacccggaacGGCcgcgAGGCCGCCCGGc -3'
miRNA:   3'- gaCAa-GG-GGGCG---------------CCG----UUCGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 18410 0.67 0.536563
Target:  5'- gCUGUcCCCgCCGgGGgaggaGGGCCGCCggCGGg -3'
miRNA:   3'- -GACAaGGG-GGCgCCg----UUCGGCGG--GCC- -5'
29398 5' -62.7 NC_006151.1 + 88387 0.67 0.536563
Target:  5'- -aGcgCgUCCGCGGCGuccgcGGCCgcgagGCCCGGg -3'
miRNA:   3'- gaCaaGgGGGCGCCGU-----UCGG-----CGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 134794 0.67 0.536563
Target:  5'- cCUGUgaggCCGCGGCGGcCCGCgCCGGa -3'
miRNA:   3'- -GACAagggGGCGCCGUUcGGCG-GGCC- -5'
29398 5' -62.7 NC_006151.1 + 3688 0.67 0.536563
Target:  5'- -cGggCCCCgggcgCGCGGCGcuucuucuugcGCCGCUCGGg -3'
miRNA:   3'- gaCaaGGGG-----GCGCCGUu----------CGGCGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.