Results 121 - 140 of 168 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29398 | 5' | -62.7 | NC_006151.1 | + | 87500 | 0.67 | 0.574787 |
Target: 5'- ----gCCCCCGUucaGGCc-GCCGCcCCGGc -3' miRNA: 3'- gacaaGGGGGCG---CCGuuCGGCG-GGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 36883 | 0.67 | 0.578648 |
Target: 5'- -gGcgCCCCCGCagagacagccccgccGGC--GCCGCgCCGGa -3' miRNA: 3'- gaCaaGGGGGCG---------------CCGuuCGGCG-GGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 21452 | 0.66 | 0.582514 |
Target: 5'- gUGgcCCCCgGCGGCGuggucccgcgucGCCGgCUCGGg -3' miRNA: 3'- gACaaGGGGgCGCCGUu-----------CGGC-GGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 133303 | 0.66 | 0.583482 |
Target: 5'- -gGUUCUCCCcggggGCGGCccgugucGAGgCGCgCCGGg -3' miRNA: 3'- gaCAAGGGGG-----CGCCG-------UUCgGCG-GGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 13938 | 0.66 | 0.58445 |
Target: 5'- ----aCCCCgGgGGCGGGCgC-CCCGGg -3' miRNA: 3'- gacaaGGGGgCgCCGUUCG-GcGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 28315 | 0.66 | 0.58445 |
Target: 5'- -cGcgUCCCCGgGGCGcccGCC-CCCGGg -3' miRNA: 3'- gaCaaGGGGGCgCCGUu--CGGcGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 45264 | 0.66 | 0.58445 |
Target: 5'- cCUGUcccagUCCCCCgucggggugaGCGGC-GGUCGuCCCGa -3' miRNA: 3'- -GACA-----AGGGGG----------CGCCGuUCGGC-GGGCc -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 107043 | 0.66 | 0.58445 |
Target: 5'- ----gCCCCUGgcCGGCGAGCCgGCCUGc -3' miRNA: 3'- gacaaGGGGGC--GCCGUUCGG-CGGGCc -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 25446 | 0.66 | 0.58445 |
Target: 5'- ----cUCCCCGCGGCcgcCCGCCCc- -3' miRNA: 3'- gacaaGGGGGCGCCGuucGGCGGGcc -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 77520 | 0.66 | 0.58445 |
Target: 5'- gCUGgcgcgCCUcggCCGCGcGUggGCCGCCCc- -3' miRNA: 3'- -GACaa---GGG---GGCGC-CGuuCGGCGGGcc -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 109224 | 0.66 | 0.593172 |
Target: 5'- ---cUCCCgCCcCGGCGcagacccAGCCGCCgCGGu -3' miRNA: 3'- gacaAGGG-GGcGCCGU-------UCGGCGG-GCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 112582 | 0.66 | 0.593172 |
Target: 5'- ---cUCgCCCGCgGGCuucguggAGGCCGCCgCGGc -3' miRNA: 3'- gacaAGgGGGCG-CCG-------UUCGGCGG-GCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 12837 | 0.66 | 0.594143 |
Target: 5'- ----cCCCCCGCGGCcacaccGAGCCuucuccGCgCGGu -3' miRNA: 3'- gacaaGGGGGCGCCG------UUCGG------CGgGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 109943 | 0.66 | 0.594143 |
Target: 5'- ---cUCCCCUggGCGGCcucGGCCGCgucuggcccacCCGGg -3' miRNA: 3'- gacaAGGGGG--CGCCGu--UCGGCG-----------GGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 24625 | 0.66 | 0.594143 |
Target: 5'- ---aUCCCgUGCagguaGGCGAGCCcgcggagcacgGCCCGGa -3' miRNA: 3'- gacaAGGGgGCG-----CCGUUCGG-----------CGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 3361 | 0.66 | 0.600944 |
Target: 5'- -cGggCCaCCUcgggcgggcaguagGCGGCGagGGCCGCCuCGGa -3' miRNA: 3'- gaCaaGG-GGG--------------CGCCGU--UCGGCGG-GCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 19285 | 0.66 | 0.603862 |
Target: 5'- -gGggCCCaCCGgGGCcAGCgGCgCGGg -3' miRNA: 3'- gaCaaGGG-GGCgCCGuUCGgCGgGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 101930 | 0.66 | 0.603862 |
Target: 5'- ----gCCCCCGUGGCcGGCgaGCCaGGa -3' miRNA: 3'- gacaaGGGGGCGCCGuUCGg-CGGgCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 4786 | 0.66 | 0.603862 |
Target: 5'- -cGggCCCggCCGCGGCGcgguagcgGGCCgcgGCCUGGc -3' miRNA: 3'- gaCaaGGG--GGCGCCGU--------UCGG---CGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 15902 | 0.66 | 0.603862 |
Target: 5'- -cGcgCCCCgaCGCGGCccgccGCCGCCCc- -3' miRNA: 3'- gaCaaGGGG--GCGCCGuu---CGGCGGGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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