miRNA display CGI


Results 61 - 80 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29398 5' -62.7 NC_006151.1 + 100146 0.67 0.546044
Target:  5'- gCUGgcacgcgCCCUC-CGGC--GCCGCCUGGa -3'
miRNA:   3'- -GACaa-----GGGGGcGCCGuuCGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 12668 0.67 0.546044
Target:  5'- ----gCCgCCGCGGCcgcAGCCGCCgCGa -3'
miRNA:   3'- gacaaGGgGGCGCCGu--UCGGCGG-GCc -5'
29398 5' -62.7 NC_006151.1 + 50719 0.67 0.546044
Target:  5'- -cGgccgCCCCgGCGGUccAGCUGCcCCGGc -3'
miRNA:   3'- gaCaa--GGGGgCGCCGu-UCGGCG-GGCC- -5'
29398 5' -62.7 NC_006151.1 + 85755 0.67 0.546044
Target:  5'- ---cUUCCCCG-GGCuGGCCGCgCUGGc -3'
miRNA:   3'- gacaAGGGGGCgCCGuUCGGCG-GGCC- -5'
29398 5' -62.7 NC_006151.1 + 136264 0.67 0.546044
Target:  5'- cCUcUUCCaCCCGCGGCcGGCCuacgaccugcggGCCCu- -3'
miRNA:   3'- -GAcAAGG-GGGCGCCGuUCGG------------CGGGcc -5'
29398 5' -62.7 NC_006151.1 + 66003 0.67 0.543194
Target:  5'- ---gUCCUCCGCGGCGucgAGCgccuccgcaaagucCGCCCGc -3'
miRNA:   3'- gacaAGGGGGCGCCGU---UCG--------------GCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 18410 0.67 0.536563
Target:  5'- gCUGUcCCCgCCGgGGgaggaGGGCCGCCggCGGg -3'
miRNA:   3'- -GACAaGGG-GGCgCCg----UUCGGCGG--GCC- -5'
29398 5' -62.7 NC_006151.1 + 38577 0.67 0.536563
Target:  5'- -cGcgCgCCCGgGGCccGCCGCcCCGGg -3'
miRNA:   3'- gaCaaGgGGGCgCCGuuCGGCG-GGCC- -5'
29398 5' -62.7 NC_006151.1 + 88387 0.67 0.536563
Target:  5'- -aGcgCgUCCGCGGCGuccgcGGCCgcgagGCCCGGg -3'
miRNA:   3'- gaCaaGgGGGCGCCGU-----UCGG-----CGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 134794 0.67 0.536563
Target:  5'- cCUGUgaggCCGCGGCGGcCCGCgCCGGa -3'
miRNA:   3'- -GACAagggGGCGCCGUUcGGCG-GGCC- -5'
29398 5' -62.7 NC_006151.1 + 3688 0.67 0.536563
Target:  5'- -cGggCCCCgggcgCGCGGCGcuucuucuugcGCCGCUCGGg -3'
miRNA:   3'- gaCaaGGGG-----GCGCCGUu----------CGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 50847 0.67 0.536563
Target:  5'- ---gUCCCCU-CGGC-GGCCGCCCu- -3'
miRNA:   3'- gacaAGGGGGcGCCGuUCGGCGGGcc -5'
29398 5' -62.7 NC_006151.1 + 18530 0.67 0.530901
Target:  5'- -cGUccCCgCCCGCgucggcacccggaacGGCcgcgAGGCCGCCCGGc -3'
miRNA:   3'- gaCAa-GG-GGGCG---------------CCG----UUCGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 81363 0.67 0.527139
Target:  5'- -gGggCCCCgGCGggcgccagcGCGAGCCGCgCCGcGg -3'
miRNA:   3'- gaCaaGGGGgCGC---------CGUUCGGCG-GGC-C- -5'
29398 5' -62.7 NC_006151.1 + 115876 0.67 0.527139
Target:  5'- ----aCCCCCGCGuGCAcaaaguagAGCCGCUCc- -3'
miRNA:   3'- gacaaGGGGGCGC-CGU--------UCGGCGGGcc -5'
29398 5' -62.7 NC_006151.1 + 125583 0.67 0.527139
Target:  5'- -cGUgCCCggcgagCGCGGCAcgugcuacAGCCGCCCGc -3'
miRNA:   3'- gaCAaGGGg-----GCGCCGU--------UCGGCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 13378 0.67 0.527139
Target:  5'- -----aCCCCGCGGCAc-CCGCcuCCGGg -3'
miRNA:   3'- gacaagGGGGCGCCGUucGGCG--GGCC- -5'
29398 5' -62.7 NC_006151.1 + 13659 0.67 0.527139
Target:  5'- -----aCCCCGCGGCAc-CCGCcuCCGGg -3'
miRNA:   3'- gacaagGGGGCGCCGUucGGCG--GGCC- -5'
29398 5' -62.7 NC_006151.1 + 36481 0.67 0.527139
Target:  5'- aUGgUCCCCCGCgaGGgGGGaCCcggucggugaGCCCGGg -3'
miRNA:   3'- gACaAGGGGGCG--CCgUUC-GG----------CGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 81662 0.68 0.520579
Target:  5'- --cUUCCCCCgcacggaGCGGCGguacgccucggcgacGGUCGCCCGc -3'
miRNA:   3'- gacAAGGGGG-------CGCCGU---------------UCGGCGGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.