Results 81 - 100 of 168 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29398 | 5' | -62.7 | NC_006151.1 | + | 31758 | 0.68 | 0.517777 |
Target: 5'- -cGcgCCUgCgGCGGCGGGCgCGCgCCGGg -3' miRNA: 3'- gaCaaGGGgG-CGCCGUUCG-GCG-GGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 38217 | 0.68 | 0.517777 |
Target: 5'- -gGggCCCgCGCccGCgAGGCCGCCUGGa -3' miRNA: 3'- gaCaaGGGgGCGc-CG-UUCGGCGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 50614 | 0.68 | 0.517777 |
Target: 5'- -cGcgCCgCCGCGGCAGcguGCaCGCCuCGGc -3' miRNA: 3'- gaCaaGGgGGCGCCGUU---CG-GCGG-GCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 55479 | 0.68 | 0.517777 |
Target: 5'- -cGcgCCCggcgCCGCGGaCGgccAGCCGCCgCGGg -3' miRNA: 3'- gaCaaGGG----GGCGCC-GU---UCGGCGG-GCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 58079 | 0.68 | 0.517777 |
Target: 5'- -cGcgCCCUCGCgGGCGAGCUcggGCCCcaGGa -3' miRNA: 3'- gaCaaGGGGGCG-CCGUUCGG---CGGG--CC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 128033 | 0.68 | 0.514982 |
Target: 5'- uCUGcgaCgCCCGCGGCAgcggcggcagcggcGGCUGCgCGGg -3' miRNA: 3'- -GACaa-GgGGGCGCCGU--------------UCGGCGgGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 46715 | 0.68 | 0.508483 |
Target: 5'- aUGgugCCUCgGgGGCcgGGGCCGgCCCGGg -3' miRNA: 3'- gACaa-GGGGgCgCCG--UUCGGC-GGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 60584 | 0.68 | 0.508483 |
Target: 5'- gCUG-UCCCCCGCcGCccccGCCGCCUc- -3' miRNA: 3'- -GACaAGGGGGCGcCGuu--CGGCGGGcc -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 40158 | 0.68 | 0.508483 |
Target: 5'- -----gCCCCGCGGC---CCGCUCGGg -3' miRNA: 3'- gacaagGGGGCGCCGuucGGCGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 124032 | 0.68 | 0.508483 |
Target: 5'- -cGgaggCCCCCGaCGGCGAGUacggCGaCCUGGa -3' miRNA: 3'- gaCaa--GGGGGC-GCCGUUCG----GC-GGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 138591 | 0.68 | 0.508483 |
Target: 5'- ----aCCCCgucguguaCGCGGCGcuGCCGCUCGGc -3' miRNA: 3'- gacaaGGGG--------GCGCCGUu-CGGCGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 99130 | 0.68 | 0.505708 |
Target: 5'- gCUGga-CCCCGgGGCGcaggccgugcacguGGCCGCCgccgCGGa -3' miRNA: 3'- -GACaagGGGGCgCCGU--------------UCGGCGG----GCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 61806 | 0.68 | 0.50294 |
Target: 5'- -cGUUCCagCCCagcguggugcucuacGCGGCGucgacgguGGCCGCcCCGGg -3' miRNA: 3'- gaCAAGG--GGG---------------CGCCGU--------UCGGCG-GGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 113751 | 0.68 | 0.499259 |
Target: 5'- gCUGUUCCCgCCGaaGCccacucccGAGCCGCCUu- -3' miRNA: 3'- -GACAAGGG-GGCgcCG--------UUCGGCGGGcc -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 131430 | 0.68 | 0.499259 |
Target: 5'- gCUGcUCUCCUcgucggGCGGCGGGCggaaGUCCGGg -3' miRNA: 3'- -GACaAGGGGG------CGCCGUUCGg---CGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 6855 | 0.68 | 0.499259 |
Target: 5'- ----gCCCCCGCGGCG-GCCaucuuGCCCc- -3' miRNA: 3'- gacaaGGGGGCGCCGUuCGG-----CGGGcc -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 117572 | 0.68 | 0.499259 |
Target: 5'- -gGgcUCCCCGCGGaggauGGGCCGCgUGGc -3' miRNA: 3'- gaCaaGGGGGCGCCg----UUCGGCGgGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 37233 | 0.68 | 0.490111 |
Target: 5'- ---cUCCCCgGCcccGGCcccgGAGcCCGCCCGGc -3' miRNA: 3'- gacaAGGGGgCG---CCG----UUC-GGCGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 107548 | 0.68 | 0.481042 |
Target: 5'- -----gCCCCGcCGGCGccGCCGCCCGc -3' miRNA: 3'- gacaagGGGGC-GCCGUu-CGGCGGGCc -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 31223 | 0.68 | 0.481042 |
Target: 5'- -cGggCCCCC--GGCcGGCCGgCCCGGc -3' miRNA: 3'- gaCaaGGGGGcgCCGuUCGGC-GGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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