miRNA display CGI


Results 101 - 120 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29398 5' -62.7 NC_006151.1 + 107548 0.68 0.481042
Target:  5'- -----gCCCCGcCGGCGccGCCGCCCGc -3'
miRNA:   3'- gacaagGGGGC-GCCGUu-CGGCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 111299 0.68 0.481042
Target:  5'- cCUGg-CCCacgaaCGCGGC-GGCCgcguGCCCGGg -3'
miRNA:   3'- -GACaaGGGg----GCGCCGuUCGG----CGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 10552 0.68 0.480139
Target:  5'- -cGUUCCgCCCggcgcccaauggcGCGGCcggcucGGCgGCCCGGc -3'
miRNA:   3'- gaCAAGG-GGG-------------CGCCGu-----UCGgCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 113872 0.68 0.472055
Target:  5'- -cGgcggCUCCUGCGGCGcaagucgucGGCCGCgCGGc -3'
miRNA:   3'- gaCaa--GGGGGCGCCGU---------UCGGCGgGCC- -5'
29398 5' -62.7 NC_006151.1 + 102131 0.68 0.472055
Target:  5'- cCUGUUCCCCgggCGCGcCGGGCUGCUgGa -3'
miRNA:   3'- -GACAAGGGG---GCGCcGUUCGGCGGgCc -5'
29398 5' -62.7 NC_006151.1 + 34506 0.69 0.463154
Target:  5'- -gGUUCUCCCGCcccGGCGucGCUuCCCGGu -3'
miRNA:   3'- gaCAAGGGGGCG---CCGUu-CGGcGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 9481 0.69 0.463154
Target:  5'- -cGgcCCCCCGCGGCc-GCgGCgUGGg -3'
miRNA:   3'- gaCaaGGGGGCGCCGuuCGgCGgGCC- -5'
29398 5' -62.7 NC_006151.1 + 37015 0.69 0.463154
Target:  5'- -cGggCCCCCGCcGCc-GCCGCgCGGc -3'
miRNA:   3'- gaCaaGGGGGCGcCGuuCGGCGgGCC- -5'
29398 5' -62.7 NC_006151.1 + 56547 0.69 0.463154
Target:  5'- -cGggCCCCUGCucggccugccgGGCGAcgcgccGCCGCCCGa -3'
miRNA:   3'- gaCaaGGGGGCG-----------CCGUU------CGGCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 107903 0.69 0.463154
Target:  5'- ----gCCCgCCGCGGcCAAGCCGaCCCc- -3'
miRNA:   3'- gacaaGGG-GGCGCC-GUUCGGC-GGGcc -5'
29398 5' -62.7 NC_006151.1 + 36610 0.69 0.454341
Target:  5'- ---cUCCCCCGCcGcCGGGCCggucucggcGCCCGGc -3'
miRNA:   3'- gacaAGGGGGCGcC-GUUCGG---------CGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 29077 0.69 0.44562
Target:  5'- -cGggCCCCgagacggcCGCGGCGA-CCGuCCCGGa -3'
miRNA:   3'- gaCaaGGGG--------GCGCCGUUcGGC-GGGCC- -5'
29398 5' -62.7 NC_006151.1 + 61431 0.69 0.428464
Target:  5'- -cGgcCCCgCCGCGGCGc-CCGCCCGc -3'
miRNA:   3'- gaCaaGGG-GGCGCCGUucGGCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 87456 0.69 0.423394
Target:  5'- -cGgccgCCCCCgcuccggcuccagcaGCGGC-AGCCGCCgCGGc -3'
miRNA:   3'- gaCaa--GGGGG---------------CGCCGuUCGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 107703 0.69 0.420033
Target:  5'- ----gCCCgCCGcCGGCAccaaGGCCGCCgCGGc -3'
miRNA:   3'- gacaaGGG-GGC-GCCGU----UCGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 116517 0.69 0.420033
Target:  5'- gCUGUUCUggCCCGCGucguagacGCGgaacuGGCCGCCgCGGu -3'
miRNA:   3'- -GACAAGG--GGGCGC--------CGU-----UCGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 108295 0.69 0.419196
Target:  5'- -cGUcugCCCCgGCGGCGAcccccacGCCccccgcGCCCGGg -3'
miRNA:   3'- gaCAa--GGGGgCGCCGUU-------CGG------CGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 38339 0.7 0.411704
Target:  5'- cCUG--CCCCCGCucuGGCccGAGCaGCCCGGc -3'
miRNA:   3'- -GACaaGGGGGCG---CCG--UUCGgCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 132827 0.7 0.409225
Target:  5'- gCUGgcCgCCCGCGGgAcggccaccacgggcGGCCGgCCCGGg -3'
miRNA:   3'- -GACaaGgGGGCGCCgU--------------UCGGC-GGGCC- -5'
29398 5' -62.7 NC_006151.1 + 114105 0.7 0.403477
Target:  5'- cCUGggCCUCgGCGGCu-GCUGCCCc- -3'
miRNA:   3'- -GACaaGGGGgCGCCGuuCGGCGGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.