miRNA display CGI


Results 121 - 140 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29398 5' -62.7 NC_006151.1 + 15237 0.7 0.40103
Target:  5'- -cGgcCCCCUGCuGGCAGGCCcugcuccagcucucGCCCGa -3'
miRNA:   3'- gaCaaGGGGGCG-CCGUUCGG--------------CGGGCc -5'
29398 5' -62.7 NC_006151.1 + 117164 0.7 0.395356
Target:  5'- gCUGUUgCUCgagaCGCGGUAgaagGGCCGCCgGGg -3'
miRNA:   3'- -GACAAgGGG----GCGCCGU----UCGGCGGgCC- -5'
29398 5' -62.7 NC_006151.1 + 87083 0.7 0.38734
Target:  5'- ----cCCCCCGCGaGCGAccucGCCGCCgUGGu -3'
miRNA:   3'- gacaaGGGGGCGC-CGUU----CGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 125245 0.7 0.38734
Target:  5'- -cGcUCCCCCGgccCGGCGGGgaCGCCCGa -3'
miRNA:   3'- gaCaAGGGGGC---GCCGUUCg-GCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 106559 0.7 0.380219
Target:  5'- aUGUgcaucCCCCCGCGGCugcucucggcgcuguGGuCCGCCCu- -3'
miRNA:   3'- gACAa----GGGGGCGCCGu--------------UC-GGCGGGcc -5'
29398 5' -62.7 NC_006151.1 + 69636 0.7 0.379433
Target:  5'- -cGgcgUCCCgCGCGuGCGGcGCCGCCgGGu -3'
miRNA:   3'- gaCa--AGGGgGCGC-CGUU-CGGCGGgCC- -5'
29398 5' -62.7 NC_006151.1 + 31603 0.7 0.379433
Target:  5'- -cGcUCCCCCGCcgccugGGCGGggauGCCGCgCCGGc -3'
miRNA:   3'- gaCaAGGGGGCG------CCGUU----CGGCG-GGCC- -5'
29398 5' -62.7 NC_006151.1 + 64473 0.7 0.371634
Target:  5'- -cGcgCCgCCGCGGCGGGgaCGCCCGcGg -3'
miRNA:   3'- gaCaaGGgGGCGCCGUUCg-GCGGGC-C- -5'
29398 5' -62.7 NC_006151.1 + 109279 0.7 0.371634
Target:  5'- gCUGgccgCCCCCuccgagaucgaGCGGCccGCCGCCuCGGc -3'
miRNA:   3'- -GACaa--GGGGG-----------CGCCGuuCGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 84537 0.71 0.356368
Target:  5'- -cGUUCCCCgUG-GGCuucuGGGcCCGCCCGGg -3'
miRNA:   3'- gaCAAGGGG-GCgCCG----UUC-GGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 44023 0.71 0.348901
Target:  5'- -----gCCCCGCGGgGAGCCGgCCGu -3'
miRNA:   3'- gacaagGGGGCGCCgUUCGGCgGGCc -5'
29398 5' -62.7 NC_006151.1 + 69125 0.71 0.348901
Target:  5'- -cGcgCCUCCGCgGGCAGGgCGCgCGGg -3'
miRNA:   3'- gaCaaGGGGGCG-CCGUUCgGCGgGCC- -5'
29398 5' -62.7 NC_006151.1 + 106092 0.71 0.348901
Target:  5'- aCUGggaCUCgGCGGCcaAGGCCGCCgCGGa -3'
miRNA:   3'- -GACaagGGGgCGCCG--UUCGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 107601 0.71 0.341547
Target:  5'- gCUGg--CCCCGcCGGCGccGCCGCCCGc -3'
miRNA:   3'- -GACaagGGGGC-GCCGUu-CGGCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 6281 0.71 0.334306
Target:  5'- cCUcUUCCUcggCCGCGGCGgcGGCCGCCaGGa -3'
miRNA:   3'- -GAcAAGGG---GGCGCCGU--UCGGCGGgCC- -5'
29398 5' -62.7 NC_006151.1 + 108941 0.71 0.334306
Target:  5'- --cUUCCgCCCGCGGCucaacccgaGGGCCGuccuCCCGGa -3'
miRNA:   3'- gacAAGG-GGGCGCCG---------UUCGGC----GGGCC- -5'
29398 5' -62.7 NC_006151.1 + 31019 0.71 0.334306
Target:  5'- -gGUcgCCgCCGCGGCccucGCgGCCCGGg -3'
miRNA:   3'- gaCAa-GGgGGCGCCGuu--CGgCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 30942 0.71 0.334306
Target:  5'- ----gCCCgCGCGGUAucgcGGCgGCCCGGg -3'
miRNA:   3'- gacaaGGGgGCGCCGU----UCGgCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 86429 0.71 0.327177
Target:  5'- cCUGU--CCUCGCGGCGccuGgCGCCCGGc -3'
miRNA:   3'- -GACAagGGGGCGCCGUu--CgGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 82647 0.71 0.320162
Target:  5'- ----cCCCCUGCGGCGagGGCgGCCCa- -3'
miRNA:   3'- gacaaGGGGGCGCCGU--UCGgCGGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.