Results 141 - 160 of 168 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29398 | 5' | -62.7 | NC_006151.1 | + | 101998 | 0.72 | 0.305799 |
Target: 5'- -aGUUCCgCCCGCGcacccGCGAgcccaugggcuucGCCGUCCGGg -3' miRNA: 3'- gaCAAGG-GGGCGC-----CGUU-------------CGGCGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 81242 | 0.72 | 0.299796 |
Target: 5'- gCUGgcgCCCCCGCgcaggggcagGGCGAGCagCGCCuCGGc -3' miRNA: 3'- -GACaa-GGGGGCG----------CCGUUCG--GCGG-GCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 37341 | 0.72 | 0.299796 |
Target: 5'- gCUGcUCaCCCCGCucGGgGAGCCcugGCCCGGc -3' miRNA: 3'- -GACaAG-GGGGCG--CCgUUCGG---CGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 50429 | 0.72 | 0.299796 |
Target: 5'- -gGcgCCCCUGCGcGCcGGCgGCCUGGg -3' miRNA: 3'- gaCaaGGGGGCGC-CGuUCGgCGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 33994 | 0.72 | 0.299796 |
Target: 5'- --uUUCCCCCGgaggggcguccCGGCGcGCCGgCCCGGc -3' miRNA: 3'- gacAAGGGGGC-----------GCCGUuCGGC-GGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 139593 | 0.72 | 0.286784 |
Target: 5'- -cGcgCCCCCccgaGCGGCGGcCCGUCCGGg -3' miRNA: 3'- gaCaaGGGGG----CGCCGUUcGGCGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 2288 | 0.72 | 0.286784 |
Target: 5'- -gGggCgCCCGCGGCGGcgacGgCGCCCGGg -3' miRNA: 3'- gaCaaGgGGGCGCCGUU----CgGCGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 65773 | 0.72 | 0.286146 |
Target: 5'- -cGUcgCCgCCgGCGGCGGcgauggcGCCGCCCGGc -3' miRNA: 3'- gaCAa-GG-GGgCGCCGUU-------CGGCGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 46847 | 0.72 | 0.280447 |
Target: 5'- ----cCCCCCGgGGCGGGCC-UCCGGc -3' miRNA: 3'- gacaaGGGGGCgCCGUUCGGcGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 87179 | 0.73 | 0.276698 |
Target: 5'- ----gCgCCCGCGGCGccgccgcagcugcuGCCGCCCGGg -3' miRNA: 3'- gacaaGgGGGCGCCGUu-------------CGGCGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 56275 | 0.73 | 0.268107 |
Target: 5'- aUGUUCcuggagaccugCCCCGCGGCGGaggcggacGCCGCgCGGu -3' miRNA: 3'- gACAAG-----------GGGGCGCCGUU--------CGGCGgGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 2466 | 0.73 | 0.262103 |
Target: 5'- -cGagCCCCCaGCGGUuGGCCGCgCGGu -3' miRNA: 3'- gaCaaGGGGG-CGCCGuUCGGCGgGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 2854 | 0.73 | 0.262103 |
Target: 5'- gUGguagUCCCCCaCGGcCGGGCCGUCCGcGg -3' miRNA: 3'- gACa---AGGGGGcGCC-GUUCGGCGGGC-C- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 117015 | 0.74 | 0.239177 |
Target: 5'- -cGcUCCCCCGCGGgccCGGGCCGCaggCGGu -3' miRNA: 3'- gaCaAGGGGGCGCC---GUUCGGCGg--GCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 6169 | 0.74 | 0.217442 |
Target: 5'- ----gCCUCgGCGGCGucgucggagaagaGGCCGCCCGGg -3' miRNA: 3'- gacaaGGGGgCGCCGU-------------UCGGCGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 69076 | 0.75 | 0.203107 |
Target: 5'- ---gUCCCCCaGCGGCAcGGCCaGCUCGGc -3' miRNA: 3'- gacaAGGGGG-CGCCGU-UCGG-CGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 125205 | 0.75 | 0.189148 |
Target: 5'- -cGUgggCCCCGCGGCccccgcGGCCGCCCGu -3' miRNA: 3'- gaCAag-GGGGCGCCGu-----UCGGCGGGCc -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 90684 | 0.75 | 0.183365 |
Target: 5'- uUG-UCCCCCGCGGCGGGggcggcggacgcgcCCGCCCc- -3' miRNA: 3'- gACaAGGGGGCGCCGUUC--------------GGCGGGcc -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 111134 | 0.75 | 0.180317 |
Target: 5'- uCUGUgcgcgCCCCCGCGcGCGcGGCCGCCUu- -3' miRNA: 3'- -GACAa----GGGGGCGC-CGU-UCGGCGGGcc -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 69737 | 0.76 | 0.171853 |
Target: 5'- aUGUggcCCCCCGCGGCcgcGaCCGCCgGGg -3' miRNA: 3'- gACAa--GGGGGCGCCGuu-C-GGCGGgCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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