miRNA display CGI


Results 81 - 100 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29398 5' -62.7 NC_006151.1 + 61431 0.69 0.428464
Target:  5'- -cGgcCCCgCCGCGGCGc-CCGCCCGc -3'
miRNA:   3'- gaCaaGGG-GGCGCCGUucGGCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 61806 0.68 0.50294
Target:  5'- -cGUUCCagCCCagcguggugcucuacGCGGCGucgacgguGGCCGCcCCGGg -3'
miRNA:   3'- gaCAAGG--GGG---------------CGCCGU--------UCGGCG-GGCC- -5'
29398 5' -62.7 NC_006151.1 + 64473 0.7 0.371634
Target:  5'- -cGcgCCgCCGCGGCGGGgaCGCCCGcGg -3'
miRNA:   3'- gaCaaGGgGGCGCCGUUCg-GCGGGC-C- -5'
29398 5' -62.7 NC_006151.1 + 64855 0.67 0.555579
Target:  5'- -aGggCCUCgGCGGaGGGCCgcuGCCCGGc -3'
miRNA:   3'- gaCaaGGGGgCGCCgUUCGG---CGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 65773 0.72 0.286146
Target:  5'- -cGUcgCCgCCgGCGGCGGcgauggcGCCGCCCGGc -3'
miRNA:   3'- gaCAa-GG-GGgCGCCGUU-------CGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 66003 0.67 0.543194
Target:  5'- ---gUCCUCCGCGGCGucgAGCgccuccgcaaagucCGCCCGc -3'
miRNA:   3'- gacaAGGGGGCGCCGU---UCG--------------GCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 66057 0.78 0.12817
Target:  5'- cCUGUccaggaCCCCGCGGacGGCCGCCUGGg -3'
miRNA:   3'- -GACAag----GGGGCGCCguUCGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 69076 0.75 0.203107
Target:  5'- ---gUCCCCCaGCGGCAcGGCCaGCUCGGc -3'
miRNA:   3'- gacaAGGGGG-CGCCGU-UCGG-CGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 69125 0.71 0.348901
Target:  5'- -cGcgCCUCCGCgGGCAGGgCGCgCGGg -3'
miRNA:   3'- gaCaaGGGGGCG-CCGUUCgGCGgGCC- -5'
29398 5' -62.7 NC_006151.1 + 69636 0.7 0.379433
Target:  5'- -cGgcgUCCCgCGCGuGCGGcGCCGCCgGGu -3'
miRNA:   3'- gaCa--AGGGgGCGC-CGUU-CGGCGGgCC- -5'
29398 5' -62.7 NC_006151.1 + 69737 0.76 0.171853
Target:  5'- aUGUggcCCCCCGCGGCcgcGaCCGCCgGGg -3'
miRNA:   3'- gACAa--GGGGGCGCCGuu-C-GGCGGgCC- -5'
29398 5' -62.7 NC_006151.1 + 70628 0.66 0.633108
Target:  5'- ---aUCCUCgGCGGCGccguGGCCGCgCGc -3'
miRNA:   3'- gacaAGGGGgCGCCGU----UCGGCGgGCc -5'
29398 5' -62.7 NC_006151.1 + 71935 0.66 0.633108
Target:  5'- aUGUUCagcaCCaGCGaGCGcguGGCCGCCuCGGc -3'
miRNA:   3'- gACAAGg---GGgCGC-CGU---UCGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 77520 0.66 0.58445
Target:  5'- gCUGgcgcgCCUcggCCGCGcGUggGCCGCCCc- -3'
miRNA:   3'- -GACaa---GGG---GGCGC-CGuuCGGCGGGcc -5'
29398 5' -62.7 NC_006151.1 + 77889 0.66 0.6136
Target:  5'- gUGcgCCCCCcgcucaGCGGCGAgacGCgGCCCa- -3'
miRNA:   3'- gACaaGGGGG------CGCCGUU---CGgCGGGcc -5'
29398 5' -62.7 NC_006151.1 + 78126 0.67 0.573823
Target:  5'- -----aUCCUGCGGCGGGCCGCgggcgccUCGGa -3'
miRNA:   3'- gacaagGGGGCGCCGUUCGGCG-------GGCC- -5'
29398 5' -62.7 NC_006151.1 + 79086 0.66 0.642864
Target:  5'- ----gCCCCCGCGcgcGCGAGCgagCGCCCc- -3'
miRNA:   3'- gacaaGGGGGCGC---CGUUCG---GCGGGcc -5'
29398 5' -62.7 NC_006151.1 + 81242 0.72 0.299796
Target:  5'- gCUGgcgCCCCCGCgcaggggcagGGCGAGCagCGCCuCGGc -3'
miRNA:   3'- -GACaa-GGGGGCG----------CCGUUCG--GCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 81363 0.67 0.527139
Target:  5'- -gGggCCCCgGCGggcgccagcGCGAGCCGCgCCGcGg -3'
miRNA:   3'- gaCaaGGGGgCGC---------CGUUCGGCG-GGC-C- -5'
29398 5' -62.7 NC_006151.1 + 81662 0.68 0.520579
Target:  5'- --cUUCCCCCgcacggaGCGGCGguacgccucggcgacGGUCGCCCGc -3'
miRNA:   3'- gacAAGGGGG-------CGCCGU---------------UCGGCGGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.