miRNA display CGI


Results 101 - 120 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29398 5' -62.7 NC_006151.1 + 81903 0.66 0.603862
Target:  5'- -cGcgCCggUCGCGGCGcGCCGCCuCGGa -3'
miRNA:   3'- gaCaaGGg-GGCGCCGUuCGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 82647 0.71 0.320162
Target:  5'- ----cCCCCUGCGGCGagGGCgGCCCa- -3'
miRNA:   3'- gacaaGGGGGCGCCGU--UCGgCGGGcc -5'
29398 5' -62.7 NC_006151.1 + 84537 0.71 0.356368
Target:  5'- -cGUUCCCCgUG-GGCuucuGGGcCCGCCCGGg -3'
miRNA:   3'- gaCAAGGGG-GCgCCG----UUC-GGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 85755 0.67 0.546044
Target:  5'- ---cUUCCCCG-GGCuGGCCGCgCUGGc -3'
miRNA:   3'- gacaAGGGGGCgCCGuUCGGCG-GGCC- -5'
29398 5' -62.7 NC_006151.1 + 86429 0.71 0.327177
Target:  5'- cCUGU--CCUCGCGGCGccuGgCGCCCGGc -3'
miRNA:   3'- -GACAagGGGGCGCCGUu--CgGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 87083 0.7 0.38734
Target:  5'- ----cCCCCCGCGaGCGAccucGCCGCCgUGGu -3'
miRNA:   3'- gacaaGGGGGCGC-CGUU----CGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 87179 0.73 0.276698
Target:  5'- ----gCgCCCGCGGCGccgccgcagcugcuGCCGCCCGGg -3'
miRNA:   3'- gacaaGgGGGCGCCGUu-------------CGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 87307 0.66 0.642864
Target:  5'- ---cUCgCCCGUGGCGcacGCCGUgCCGGc -3'
miRNA:   3'- gacaAGgGGGCGCCGUu--CGGCG-GGCC- -5'
29398 5' -62.7 NC_006151.1 + 87456 0.69 0.423394
Target:  5'- -cGgccgCCCCCgcuccggcuccagcaGCGGC-AGCCGCCgCGGc -3'
miRNA:   3'- gaCaa--GGGGG---------------CGCCGuUCGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 87500 0.67 0.574787
Target:  5'- ----gCCCCCGUucaGGCc-GCCGCcCCGGc -3'
miRNA:   3'- gacaaGGGGGCG---CCGuuCGGCG-GGCC- -5'
29398 5' -62.7 NC_006151.1 + 87526 0.66 0.642864
Target:  5'- -cGcgCCCgCCuCGGCcccccAGCCGCCCGu -3'
miRNA:   3'- gaCaaGGG-GGcGCCGu----UCGGCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 88387 0.67 0.536563
Target:  5'- -aGcgCgUCCGCGGCGuccgcGGCCgcgagGCCCGGg -3'
miRNA:   3'- gaCaaGgGGGCGCCGU-----UCGG-----CGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 90684 0.75 0.183365
Target:  5'- uUG-UCCCCCGCGGCGGGggcggcggacgcgcCCGCCCc- -3'
miRNA:   3'- gACaAGGGGGCGCCGUUC--------------GGCGGGcc -5'
29398 5' -62.7 NC_006151.1 + 99130 0.68 0.505708
Target:  5'- gCUGga-CCCCGgGGCGcaggccgugcacguGGCCGCCgccgCGGa -3'
miRNA:   3'- -GACaagGGGGCgCCGU--------------UCGGCGG----GCC- -5'
29398 5' -62.7 NC_006151.1 + 99660 0.66 0.642864
Target:  5'- ----cCUUCCGCGcGCAgAGCCGCUgGGg -3'
miRNA:   3'- gacaaGGGGGCGC-CGU-UCGGCGGgCC- -5'
29398 5' -62.7 NC_006151.1 + 100146 0.67 0.546044
Target:  5'- gCUGgcacgcgCCCUC-CGGC--GCCGCCUGGa -3'
miRNA:   3'- -GACaa-----GGGGGcGCCGuuCGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 101536 0.66 0.623351
Target:  5'- ----gCCUUCGUGGCGcGCCugcGCCCGGc -3'
miRNA:   3'- gacaaGGGGGCGCCGUuCGG---CGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 101930 0.66 0.603862
Target:  5'- ----gCCCCCGUGGCcGGCgaGCCaGGa -3'
miRNA:   3'- gacaaGGGGGCGCCGuUCGg-CGGgCC- -5'
29398 5' -62.7 NC_006151.1 + 101998 0.72 0.305799
Target:  5'- -aGUUCCgCCCGCGcacccGCGAgcccaugggcuucGCCGUCCGGg -3'
miRNA:   3'- gaCAAGG-GGGCGC-----CGUU-------------CGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 102131 0.68 0.472055
Target:  5'- cCUGUUCCCCgggCGCGcCGGGCUGCUgGa -3'
miRNA:   3'- -GACAAGGGG---GCGCcGUUCGGCGGgCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.