Results 121 - 140 of 168 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29398 | 5' | -62.7 | NC_006151.1 | + | 104535 | 0.66 | 0.633108 |
Target: 5'- ---cUUCCCCGaguacgaGGCcgagcuGGCCGCCCuGGg -3' miRNA: 3'- gacaAGGGGGCg------CCGu-----UCGGCGGG-CC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 106092 | 0.71 | 0.348901 |
Target: 5'- aCUGggaCUCgGCGGCcaAGGCCGCCgCGGa -3' miRNA: 3'- -GACaagGGGgCGCCG--UUCGGCGG-GCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 106559 | 0.7 | 0.380219 |
Target: 5'- aUGUgcaucCCCCCGCGGCugcucucggcgcuguGGuCCGCCCu- -3' miRNA: 3'- gACAa----GGGGGCGCCGu--------------UC-GGCGGGcc -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 107043 | 0.66 | 0.58445 |
Target: 5'- ----gCCCCUGgcCGGCGAGCCgGCCUGc -3' miRNA: 3'- gacaaGGGGGC--GCCGUUCGG-CGGGCc -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 107548 | 0.68 | 0.481042 |
Target: 5'- -----gCCCCGcCGGCGccGCCGCCCGc -3' miRNA: 3'- gacaagGGGGC-GCCGUu-CGGCGGGCc -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 107601 | 0.71 | 0.341547 |
Target: 5'- gCUGg--CCCCGcCGGCGccGCCGCCCGc -3' miRNA: 3'- -GACaagGGGGC-GCCGUu-CGGCGGGCc -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 107703 | 0.69 | 0.420033 |
Target: 5'- ----gCCCgCCGcCGGCAccaaGGCCGCCgCGGc -3' miRNA: 3'- gacaaGGG-GGC-GCCGU----UCGGCGG-GCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 107903 | 0.69 | 0.463154 |
Target: 5'- ----gCCCgCCGCGGcCAAGCCGaCCCc- -3' miRNA: 3'- gacaaGGG-GGCGCC-GUUCGGC-GGGcc -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 108295 | 0.69 | 0.419196 |
Target: 5'- -cGUcugCCCCgGCGGCGAcccccacGCCccccgcGCCCGGg -3' miRNA: 3'- gaCAa--GGGGgCGCCGUU-------CGG------CGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 108941 | 0.71 | 0.334306 |
Target: 5'- --cUUCCgCCCGCGGCucaacccgaGGGCCGuccuCCCGGa -3' miRNA: 3'- gacAAGG-GGGCGCCG---------UUCGGC----GGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 109224 | 0.66 | 0.593172 |
Target: 5'- ---cUCCCgCCcCGGCGcagacccAGCCGCCgCGGu -3' miRNA: 3'- gacaAGGG-GGcGCCGU-------UCGGCGG-GCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 109279 | 0.7 | 0.371634 |
Target: 5'- gCUGgccgCCCCCuccgagaucgaGCGGCccGCCGCCuCGGc -3' miRNA: 3'- -GACaa--GGGGG-----------CGCCGuuCGGCGG-GCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 109411 | 0.67 | 0.564202 |
Target: 5'- ----aCCUUCGCGGCcGGCCGCaccaccgCCGGc -3' miRNA: 3'- gacaaGGGGGCGCCGuUCGGCG-------GGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 109943 | 0.66 | 0.594143 |
Target: 5'- ---cUCCCCUggGCGGCcucGGCCGCgucuggcccacCCGGg -3' miRNA: 3'- gacaAGGGGG--CGCCGu--UCGGCG-----------GGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 111134 | 0.75 | 0.180317 |
Target: 5'- uCUGUgcgcgCCCCCGCGcGCGcGGCCGCCUu- -3' miRNA: 3'- -GACAa----GGGGGCGC-CGU-UCGGCGGGcc -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 111299 | 0.68 | 0.481042 |
Target: 5'- cCUGg-CCCacgaaCGCGGC-GGCCgcguGCCCGGg -3' miRNA: 3'- -GACaaGGGg----GCGCCGuUCGG----CGGGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 112582 | 0.66 | 0.593172 |
Target: 5'- ---cUCgCCCGCgGGCuucguggAGGCCGCCgCGGc -3' miRNA: 3'- gacaAGgGGGCG-CCG-------UUCGGCGG-GCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 113751 | 0.68 | 0.499259 |
Target: 5'- gCUGUUCCCgCCGaaGCccacucccGAGCCGCCUu- -3' miRNA: 3'- -GACAAGGG-GGCgcCG--------UUCGGCGGGcc -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 113872 | 0.68 | 0.472055 |
Target: 5'- -cGgcggCUCCUGCGGCGcaagucgucGGCCGCgCGGc -3' miRNA: 3'- gaCaa--GGGGGCGCCGU---------UCGGCGgGCC- -5' |
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29398 | 5' | -62.7 | NC_006151.1 | + | 114105 | 0.7 | 0.403477 |
Target: 5'- cCUGggCCUCgGCGGCu-GCUGCCCc- -3' miRNA: 3'- -GACaaGGGGgCGCCGuuCGGCGGGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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