miRNA display CGI


Results 41 - 60 of 168 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29398 5' -62.7 NC_006151.1 + 107903 0.69 0.463154
Target:  5'- ----gCCCgCCGCGGcCAAGCCGaCCCc- -3'
miRNA:   3'- gacaaGGG-GGCGCC-GUUCGGC-GGGcc -5'
29398 5' -62.7 NC_006151.1 + 107703 0.69 0.420033
Target:  5'- ----gCCCgCCGcCGGCAccaaGGCCGCCgCGGc -3'
miRNA:   3'- gacaaGGG-GGC-GCCGU----UCGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 107601 0.71 0.341547
Target:  5'- gCUGg--CCCCGcCGGCGccGCCGCCCGc -3'
miRNA:   3'- -GACaagGGGGC-GCCGUu-CGGCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 107548 0.68 0.481042
Target:  5'- -----gCCCCGcCGGCGccGCCGCCCGc -3'
miRNA:   3'- gacaagGGGGC-GCCGUu-CGGCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 107043 0.66 0.58445
Target:  5'- ----gCCCCUGgcCGGCGAGCCgGCCUGc -3'
miRNA:   3'- gacaaGGGGGC--GCCGUUCGG-CGGGCc -5'
29398 5' -62.7 NC_006151.1 + 106559 0.7 0.380219
Target:  5'- aUGUgcaucCCCCCGCGGCugcucucggcgcuguGGuCCGCCCu- -3'
miRNA:   3'- gACAa----GGGGGCGCCGu--------------UC-GGCGGGcc -5'
29398 5' -62.7 NC_006151.1 + 106092 0.71 0.348901
Target:  5'- aCUGggaCUCgGCGGCcaAGGCCGCCgCGGa -3'
miRNA:   3'- -GACaagGGGgCGCCG--UUCGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 104535 0.66 0.633108
Target:  5'- ---cUUCCCCGaguacgaGGCcgagcuGGCCGCCCuGGg -3'
miRNA:   3'- gacaAGGGGGCg------CCGu-----UCGGCGGG-CC- -5'
29398 5' -62.7 NC_006151.1 + 102131 0.68 0.472055
Target:  5'- cCUGUUCCCCgggCGCGcCGGGCUGCUgGa -3'
miRNA:   3'- -GACAAGGGG---GCGCcGUUCGGCGGgCc -5'
29398 5' -62.7 NC_006151.1 + 101998 0.72 0.305799
Target:  5'- -aGUUCCgCCCGCGcacccGCGAgcccaugggcuucGCCGUCCGGg -3'
miRNA:   3'- gaCAAGG-GGGCGC-----CGUU-------------CGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 101930 0.66 0.603862
Target:  5'- ----gCCCCCGUGGCcGGCgaGCCaGGa -3'
miRNA:   3'- gacaaGGGGGCGCCGuUCGg-CGGgCC- -5'
29398 5' -62.7 NC_006151.1 + 101536 0.66 0.623351
Target:  5'- ----gCCUUCGUGGCGcGCCugcGCCCGGc -3'
miRNA:   3'- gacaaGGGGGCGCCGUuCGG---CGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 100146 0.67 0.546044
Target:  5'- gCUGgcacgcgCCCUC-CGGC--GCCGCCUGGa -3'
miRNA:   3'- -GACaa-----GGGGGcGCCGuuCGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 99660 0.66 0.642864
Target:  5'- ----cCUUCCGCGcGCAgAGCCGCUgGGg -3'
miRNA:   3'- gacaaGGGGGCGC-CGU-UCGGCGGgCC- -5'
29398 5' -62.7 NC_006151.1 + 99130 0.68 0.505708
Target:  5'- gCUGga-CCCCGgGGCGcaggccgugcacguGGCCGCCgccgCGGa -3'
miRNA:   3'- -GACaagGGGGCgCCGU--------------UCGGCGG----GCC- -5'
29398 5' -62.7 NC_006151.1 + 90684 0.75 0.183365
Target:  5'- uUG-UCCCCCGCGGCGGGggcggcggacgcgcCCGCCCc- -3'
miRNA:   3'- gACaAGGGGGCGCCGUUC--------------GGCGGGcc -5'
29398 5' -62.7 NC_006151.1 + 88387 0.67 0.536563
Target:  5'- -aGcgCgUCCGCGGCGuccgcGGCCgcgagGCCCGGg -3'
miRNA:   3'- gaCaaGgGGGCGCCGU-----UCGG-----CGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 87526 0.66 0.642864
Target:  5'- -cGcgCCCgCCuCGGCcccccAGCCGCCCGu -3'
miRNA:   3'- gaCaaGGG-GGcGCCGu----UCGGCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 87500 0.67 0.574787
Target:  5'- ----gCCCCCGUucaGGCc-GCCGCcCCGGc -3'
miRNA:   3'- gacaaGGGGGCG---CCGuuCGGCG-GGCC- -5'
29398 5' -62.7 NC_006151.1 + 87456 0.69 0.423394
Target:  5'- -cGgccgCCCCCgcuccggcuccagcaGCGGC-AGCCGCCgCGGc -3'
miRNA:   3'- gaCaa--GGGGG---------------CGCCGuUCGGCGG-GCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.