miRNA display CGI


Results 61 - 80 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29398 5' -62.7 NC_006151.1 + 87307 0.66 0.642864
Target:  5'- ---cUCgCCCGUGGCGcacGCCGUgCCGGc -3'
miRNA:   3'- gacaAGgGGGCGCCGUu--CGGCG-GGCC- -5'
29398 5' -62.7 NC_006151.1 + 87179 0.73 0.276698
Target:  5'- ----gCgCCCGCGGCGccgccgcagcugcuGCCGCCCGGg -3'
miRNA:   3'- gacaaGgGGGCGCCGUu-------------CGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 87083 0.7 0.38734
Target:  5'- ----cCCCCCGCGaGCGAccucGCCGCCgUGGu -3'
miRNA:   3'- gacaaGGGGGCGC-CGUU----CGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 86429 0.71 0.327177
Target:  5'- cCUGU--CCUCGCGGCGccuGgCGCCCGGc -3'
miRNA:   3'- -GACAagGGGGCGCCGUu--CgGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 85755 0.67 0.546044
Target:  5'- ---cUUCCCCG-GGCuGGCCGCgCUGGc -3'
miRNA:   3'- gacaAGGGGGCgCCGuUCGGCG-GGCC- -5'
29398 5' -62.7 NC_006151.1 + 84537 0.71 0.356368
Target:  5'- -cGUUCCCCgUG-GGCuucuGGGcCCGCCCGGg -3'
miRNA:   3'- gaCAAGGGG-GCgCCG----UUC-GGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 82647 0.71 0.320162
Target:  5'- ----cCCCCUGCGGCGagGGCgGCCCa- -3'
miRNA:   3'- gacaaGGGGGCGCCGU--UCGgCGGGcc -5'
29398 5' -62.7 NC_006151.1 + 81903 0.66 0.603862
Target:  5'- -cGcgCCggUCGCGGCGcGCCGCCuCGGa -3'
miRNA:   3'- gaCaaGGg-GGCGCCGUuCGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 81662 0.68 0.520579
Target:  5'- --cUUCCCCCgcacggaGCGGCGguacgccucggcgacGGUCGCCCGc -3'
miRNA:   3'- gacAAGGGGG-------CGCCGU---------------UCGGCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 81363 0.67 0.527139
Target:  5'- -gGggCCCCgGCGggcgccagcGCGAGCCGCgCCGcGg -3'
miRNA:   3'- gaCaaGGGGgCGC---------CGUUCGGCG-GGC-C- -5'
29398 5' -62.7 NC_006151.1 + 81242 0.72 0.299796
Target:  5'- gCUGgcgCCCCCGCgcaggggcagGGCGAGCagCGCCuCGGc -3'
miRNA:   3'- -GACaa-GGGGGCG----------CCGUUCG--GCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 79086 0.66 0.642864
Target:  5'- ----gCCCCCGCGcgcGCGAGCgagCGCCCc- -3'
miRNA:   3'- gacaaGGGGGCGC---CGUUCG---GCGGGcc -5'
29398 5' -62.7 NC_006151.1 + 78126 0.67 0.573823
Target:  5'- -----aUCCUGCGGCGGGCCGCgggcgccUCGGa -3'
miRNA:   3'- gacaagGGGGCGCCGUUCGGCG-------GGCC- -5'
29398 5' -62.7 NC_006151.1 + 77889 0.66 0.6136
Target:  5'- gUGcgCCCCCcgcucaGCGGCGAgacGCgGCCCa- -3'
miRNA:   3'- gACaaGGGGG------CGCCGUU---CGgCGGGcc -5'
29398 5' -62.7 NC_006151.1 + 77520 0.66 0.58445
Target:  5'- gCUGgcgcgCCUcggCCGCGcGUggGCCGCCCc- -3'
miRNA:   3'- -GACaa---GGG---GGCGC-CGuuCGGCGGGcc -5'
29398 5' -62.7 NC_006151.1 + 71935 0.66 0.633108
Target:  5'- aUGUUCagcaCCaGCGaGCGcguGGCCGCCuCGGc -3'
miRNA:   3'- gACAAGg---GGgCGC-CGU---UCGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 70628 0.66 0.633108
Target:  5'- ---aUCCUCgGCGGCGccguGGCCGCgCGc -3'
miRNA:   3'- gacaAGGGGgCGCCGU----UCGGCGgGCc -5'
29398 5' -62.7 NC_006151.1 + 69737 0.76 0.171853
Target:  5'- aUGUggcCCCCCGCGGCcgcGaCCGCCgGGg -3'
miRNA:   3'- gACAa--GGGGGCGCCGuu-C-GGCGGgCC- -5'
29398 5' -62.7 NC_006151.1 + 69636 0.7 0.379433
Target:  5'- -cGgcgUCCCgCGCGuGCGGcGCCGCCgGGu -3'
miRNA:   3'- gaCa--AGGGgGCGC-CGUU-CGGCGGgCC- -5'
29398 5' -62.7 NC_006151.1 + 69125 0.71 0.348901
Target:  5'- -cGcgCCUCCGCgGGCAGGgCGCgCGGg -3'
miRNA:   3'- gaCaaGGGGGCG-CCGUUCgGCGgGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.