miRNA display CGI


Results 81 - 100 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29398 5' -62.7 NC_006151.1 + 69076 0.75 0.203107
Target:  5'- ---gUCCCCCaGCGGCAcGGCCaGCUCGGc -3'
miRNA:   3'- gacaAGGGGG-CGCCGU-UCGG-CGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 66057 0.78 0.12817
Target:  5'- cCUGUccaggaCCCCGCGGacGGCCGCCUGGg -3'
miRNA:   3'- -GACAag----GGGGCGCCguUCGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 66003 0.67 0.543194
Target:  5'- ---gUCCUCCGCGGCGucgAGCgccuccgcaaagucCGCCCGc -3'
miRNA:   3'- gacaAGGGGGCGCCGU---UCG--------------GCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 65773 0.72 0.286146
Target:  5'- -cGUcgCCgCCgGCGGCGGcgauggcGCCGCCCGGc -3'
miRNA:   3'- gaCAa-GG-GGgCGCCGUU-------CGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 64855 0.67 0.555579
Target:  5'- -aGggCCUCgGCGGaGGGCCgcuGCCCGGc -3'
miRNA:   3'- gaCaaGGGGgCGCCgUUCGG---CGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 64473 0.7 0.371634
Target:  5'- -cGcgCCgCCGCGGCGGGgaCGCCCGcGg -3'
miRNA:   3'- gaCaaGGgGGCGCCGUUCg-GCGGGC-C- -5'
29398 5' -62.7 NC_006151.1 + 61806 0.68 0.50294
Target:  5'- -cGUUCCagCCCagcguggugcucuacGCGGCGucgacgguGGCCGCcCCGGg -3'
miRNA:   3'- gaCAAGG--GGG---------------CGCCGU--------UCGGCG-GGCC- -5'
29398 5' -62.7 NC_006151.1 + 61431 0.69 0.428464
Target:  5'- -cGgcCCCgCCGCGGCGc-CCGCCCGc -3'
miRNA:   3'- gaCaaGGG-GGCGCCGUucGGCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 60855 0.66 0.623351
Target:  5'- gUGgcgUCCaugacgaggaCCCGCGGCAgccgcgcagcAGCCGCgCGa -3'
miRNA:   3'- gACa--AGG----------GGGCGCCGU----------UCGGCGgGCc -5'
29398 5' -62.7 NC_006151.1 + 60584 0.68 0.508483
Target:  5'- gCUG-UCCCCCGCcGCccccGCCGCCUc- -3'
miRNA:   3'- -GACaAGGGGGCGcCGuu--CGGCGGGcc -5'
29398 5' -62.7 NC_006151.1 + 60543 0.79 0.105005
Target:  5'- uUG-UCCCCCGCGGCGAggcGCgCGCCCaGGa -3'
miRNA:   3'- gACaAGGGGGCGCCGUU---CG-GCGGG-CC- -5'
29398 5' -62.7 NC_006151.1 + 58079 0.68 0.517777
Target:  5'- -cGcgCCCUCGCgGGCGAGCUcggGCCCcaGGa -3'
miRNA:   3'- gaCaaGGGGGCG-CCGUUCGG---CGGG--CC- -5'
29398 5' -62.7 NC_006151.1 + 56547 0.69 0.463154
Target:  5'- -cGggCCCCUGCucggccugccgGGCGAcgcgccGCCGCCCGa -3'
miRNA:   3'- gaCaaGGGGGCG-----------CCGUU------CGGCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 56493 0.66 0.6136
Target:  5'- gCUGUcggcCCCCCG-GGCc--CCGCCCGu -3'
miRNA:   3'- -GACAa---GGGGGCgCCGuucGGCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 56275 0.73 0.268107
Target:  5'- aUGUUCcuggagaccugCCCCGCGGCGGaggcggacGCCGCgCGGu -3'
miRNA:   3'- gACAAG-----------GGGGCGCCGUU--------CGGCGgGCC- -5'
29398 5' -62.7 NC_006151.1 + 55479 0.68 0.517777
Target:  5'- -cGcgCCCggcgCCGCGGaCGgccAGCCGCCgCGGg -3'
miRNA:   3'- gaCaaGGG----GGCGCC-GU---UCGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 53978 0.66 0.6136
Target:  5'- -gGcgCCUCCgcgggcgucGCGGCGAGCU-CCCGGa -3'
miRNA:   3'- gaCaaGGGGG---------CGCCGUUCGGcGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 53513 0.66 0.642864
Target:  5'- gUGcUCCgCCGCGcGCcccguGAGCCGCuCCaGGg -3'
miRNA:   3'- gACaAGGgGGCGC-CG-----UUCGGCG-GG-CC- -5'
29398 5' -62.7 NC_006151.1 + 52374 0.67 0.563242
Target:  5'- -cGcgCCCCCggggcccgcggggGCGGCGGGCgccgccgCGCCCGa -3'
miRNA:   3'- gaCaaGGGGG-------------CGCCGUUCG-------GCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 50847 0.67 0.536563
Target:  5'- ---gUCCCCU-CGGC-GGCCGCCCu- -3'
miRNA:   3'- gacaAGGGGGcGCCGuUCGGCGGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.