miRNA display CGI


Results 101 - 120 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29398 5' -62.7 NC_006151.1 + 50719 0.67 0.546044
Target:  5'- -cGgccgCCCCgGCGGUccAGCUGCcCCGGc -3'
miRNA:   3'- gaCaa--GGGGgCGCCGu-UCGGCG-GGCC- -5'
29398 5' -62.7 NC_006151.1 + 50614 0.68 0.517777
Target:  5'- -cGcgCCgCCGCGGCAGcguGCaCGCCuCGGc -3'
miRNA:   3'- gaCaaGGgGGCGCCGUU---CG-GCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 50429 0.72 0.299796
Target:  5'- -gGcgCCCCUGCGcGCcGGCgGCCUGGg -3'
miRNA:   3'- gaCaaGGGGGCGC-CGuUCGgCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 48574 0.8 0.092588
Target:  5'- -----aCCCUGCGGCcuGCCGCCCGGg -3'
miRNA:   3'- gacaagGGGGCGCCGuuCGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 48269 0.67 0.574787
Target:  5'- ----aCCaCCCGCugcugGGCcucGAGCCGCCCGu -3'
miRNA:   3'- gacaaGG-GGGCG-----CCG---UUCGGCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 46847 0.72 0.280447
Target:  5'- ----cCCCCCGgGGCGGGCC-UCCGGc -3'
miRNA:   3'- gacaaGGGGGCgCCGUUCGGcGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 46715 0.68 0.508483
Target:  5'- aUGgugCCUCgGgGGCcgGGGCCGgCCCGGg -3'
miRNA:   3'- gACaa-GGGGgCgCCG--UUCGGC-GGGCC- -5'
29398 5' -62.7 NC_006151.1 + 45264 0.66 0.58445
Target:  5'- cCUGUcccagUCCCCCgucggggugaGCGGC-GGUCGuCCCGa -3'
miRNA:   3'- -GACA-----AGGGGG----------CGCCGuUCGGC-GGGCc -5'
29398 5' -62.7 NC_006151.1 + 44167 0.66 0.642864
Target:  5'- -cGUgCCCCUGgGaGCAccgcgggucGCCGUCCGGg -3'
miRNA:   3'- gaCAaGGGGGCgC-CGUu--------CGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 44023 0.71 0.348901
Target:  5'- -----gCCCCGCGGgGAGCCGgCCGu -3'
miRNA:   3'- gacaagGGGGCGCCgUUCGGCgGGCc -5'
29398 5' -62.7 NC_006151.1 + 40403 0.66 0.623351
Target:  5'- uCUGcgUCCgCgGCGGC-GGCCucgguccccucgGCCCGGc -3'
miRNA:   3'- -GACa-AGGgGgCGCCGuUCGG------------CGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 40158 0.68 0.508483
Target:  5'- -----gCCCCGCGGC---CCGCUCGGg -3'
miRNA:   3'- gacaagGGGGCGCCGuucGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 39957 0.66 0.633108
Target:  5'- gCUGa--CCCCG-GGCGccgucGCCGCCgCGGg -3'
miRNA:   3'- -GACaagGGGGCgCCGUu----CGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 38577 0.67 0.536563
Target:  5'- -cGcgCgCCCGgGGCccGCCGCcCCGGg -3'
miRNA:   3'- gaCaaGgGGGCgCCGuuCGGCG-GGCC- -5'
29398 5' -62.7 NC_006151.1 + 38525 0.66 0.603862
Target:  5'- ---cUCCCCCGCcGCcGGCCcggacccagcGCCCGa -3'
miRNA:   3'- gacaAGGGGGCGcCGuUCGG----------CGGGCc -5'
29398 5' -62.7 NC_006151.1 + 38339 0.7 0.411704
Target:  5'- cCUG--CCCCCGCucuGGCccGAGCaGCCCGGc -3'
miRNA:   3'- -GACaaGGGGGCG---CCG--UUCGgCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 38217 0.68 0.517777
Target:  5'- -gGggCCCgCGCccGCgAGGCCGCCUGGa -3'
miRNA:   3'- gaCaaGGGgGCGc-CG-UUCGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 37341 0.72 0.299796
Target:  5'- gCUGcUCaCCCCGCucGGgGAGCCcugGCCCGGc -3'
miRNA:   3'- -GACaAG-GGGGCG--CCgUUCGG---CGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 37233 0.68 0.490111
Target:  5'- ---cUCCCCgGCcccGGCcccgGAGcCCGCCCGGc -3'
miRNA:   3'- gacaAGGGGgCG---CCG----UUC-GGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 37015 0.69 0.463154
Target:  5'- -cGggCCCCCGCcGCc-GCCGCgCGGc -3'
miRNA:   3'- gaCaaGGGGGCGcCGuuCGGCGgGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.