Results 41 - 60 of 168 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29398 | 5' | -62.7 | NC_006151.1 | + | 44167 | 0.66 | 0.642864 |
Target: 5'- -cGUgCCCCUGgGaGCAccgcgggucGCCGUCCGGg -3' miRNA: 3'- gaCAaGGGGGCgC-CGUu--------CGGCGGGCC- -5' |
|||||||
29398 | 5' | -62.7 | NC_006151.1 | + | 87526 | 0.66 | 0.642864 |
Target: 5'- -cGcgCCCgCCuCGGCcccccAGCCGCCCGu -3' miRNA: 3'- gaCaaGGG-GGcGCCGu----UCGGCGGGCc -5' |
|||||||
29398 | 5' | -62.7 | NC_006151.1 | + | 53513 | 0.66 | 0.642864 |
Target: 5'- gUGcUCCgCCGCGcGCcccguGAGCCGCuCCaGGg -3' miRNA: 3'- gACaAGGgGGCGC-CG-----UUCGGCG-GG-CC- -5' |
|||||||
29398 | 5' | -62.7 | NC_006151.1 | + | 79086 | 0.66 | 0.642864 |
Target: 5'- ----gCCCCCGCGcgcGCGAGCgagCGCCCc- -3' miRNA: 3'- gacaaGGGGGCGC---CGUUCG---GCGGGcc -5' |
|||||||
29398 | 5' | -62.7 | NC_006151.1 | + | 99660 | 0.66 | 0.642864 |
Target: 5'- ----cCUUCCGCGcGCAgAGCCGCUgGGg -3' miRNA: 3'- gacaaGGGGGCGC-CGU-UCGGCGGgCC- -5' |
|||||||
29398 | 5' | -62.7 | NC_006151.1 | + | 39957 | 0.66 | 0.633108 |
Target: 5'- gCUGa--CCCCG-GGCGccgucGCCGCCgCGGg -3' miRNA: 3'- -GACaagGGGGCgCCGUu----CGGCGG-GCC- -5' |
|||||||
29398 | 5' | -62.7 | NC_006151.1 | + | 142280 | 0.66 | 0.623351 |
Target: 5'- ----gUCCCgGCGGCcAGaCCGgCCGGg -3' miRNA: 3'- gacaaGGGGgCGCCGuUC-GGCgGGCC- -5' |
|||||||
29398 | 5' | -62.7 | NC_006151.1 | + | 101930 | 0.66 | 0.603862 |
Target: 5'- ----gCCCCCGUGGCcGGCgaGCCaGGa -3' miRNA: 3'- gacaaGGGGGCGCCGuUCGg-CGGgCC- -5' |
|||||||
29398 | 5' | -62.7 | NC_006151.1 | + | 4786 | 0.66 | 0.603862 |
Target: 5'- -cGggCCCggCCGCGGCGcgguagcgGGCCgcgGCCUGGc -3' miRNA: 3'- gaCaaGGG--GGCGCCGU--------UCGG---CGGGCC- -5' |
|||||||
29398 | 5' | -62.7 | NC_006151.1 | + | 15902 | 0.66 | 0.603862 |
Target: 5'- -cGcgCCCCgaCGCGGCccgccGCCGCCCc- -3' miRNA: 3'- gaCaaGGGG--GCGCCGuu---CGGCGGGcc -5' |
|||||||
29398 | 5' | -62.7 | NC_006151.1 | + | 38525 | 0.66 | 0.603862 |
Target: 5'- ---cUCCCCCGCcGCcGGCCcggacccagcGCCCGa -3' miRNA: 3'- gacaAGGGGGCGcCGuUCGG----------CGGGCc -5' |
|||||||
29398 | 5' | -62.7 | NC_006151.1 | + | 53978 | 0.66 | 0.6136 |
Target: 5'- -gGcgCCUCCgcgggcgucGCGGCGAGCU-CCCGGa -3' miRNA: 3'- gaCaaGGGGG---------CGCCGUUCGGcGGGCC- -5' |
|||||||
29398 | 5' | -62.7 | NC_006151.1 | + | 56493 | 0.66 | 0.6136 |
Target: 5'- gCUGUcggcCCCCCG-GGCc--CCGCCCGu -3' miRNA: 3'- -GACAa---GGGGGCgCCGuucGGCGGGCc -5' |
|||||||
29398 | 5' | -62.7 | NC_006151.1 | + | 77889 | 0.66 | 0.6136 |
Target: 5'- gUGcgCCCCCcgcucaGCGGCGAgacGCgGCCCa- -3' miRNA: 3'- gACaaGGGGG------CGCCGUU---CGgCGGGcc -5' |
|||||||
29398 | 5' | -62.7 | NC_006151.1 | + | 118211 | 0.66 | 0.6136 |
Target: 5'- -cGUggCCgUgGUGGCGGG-CGCCCGGa -3' miRNA: 3'- gaCAa-GGgGgCGCCGUUCgGCGGGCC- -5' |
|||||||
29398 | 5' | -62.7 | NC_006151.1 | + | 131923 | 0.66 | 0.623351 |
Target: 5'- -aGggCCUCCGCGGUgcuGCCGUagCUGGc -3' miRNA: 3'- gaCaaGGGGGCGCCGuu-CGGCG--GGCC- -5' |
|||||||
29398 | 5' | -62.7 | NC_006151.1 | + | 26340 | 0.66 | 0.623351 |
Target: 5'- ----gCCCgCCucacggggcgGCGGCGGGCCGCgUCGGg -3' miRNA: 3'- gacaaGGG-GG----------CGCCGUUCGGCG-GGCC- -5' |
|||||||
29398 | 5' | -62.7 | NC_006151.1 | + | 40403 | 0.66 | 0.623351 |
Target: 5'- uCUGcgUCCgCgGCGGC-GGCCucgguccccucgGCCCGGc -3' miRNA: 3'- -GACa-AGGgGgCGCCGuUCGG------------CGGGCC- -5' |
|||||||
29398 | 5' | -62.7 | NC_006151.1 | + | 101536 | 0.66 | 0.623351 |
Target: 5'- ----gCCUUCGUGGCGcGCCugcGCCCGGc -3' miRNA: 3'- gacaaGGGGGCGCCGUuCGG---CGGGCC- -5' |
|||||||
29398 | 5' | -62.7 | NC_006151.1 | + | 60855 | 0.66 | 0.623351 |
Target: 5'- gUGgcgUCCaugacgaggaCCCGCGGCAgccgcgcagcAGCCGCgCGa -3' miRNA: 3'- gACa--AGG----------GGGCGCCGU----------UCGGCGgGCc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home