miRNA display CGI


Results 121 - 140 of 168 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29398 5' -62.7 NC_006151.1 + 3688 0.67 0.536563
Target:  5'- -cGggCCCCgggcgCGCGGCGcuucuucuugcGCCGCUCGGg -3'
miRNA:   3'- gaCaaGGGG-----GCGCCGUu----------CGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 134794 0.67 0.536563
Target:  5'- cCUGUgaggCCGCGGCGGcCCGCgCCGGa -3'
miRNA:   3'- -GACAagggGGCGCCGUUcGGCG-GGCC- -5'
29398 5' -62.7 NC_006151.1 + 141687 0.67 0.555579
Target:  5'- uCUGccUCCCaCgGCGGCuGGCggcggacgcggUGCCCGGg -3'
miRNA:   3'- -GACa-AGGG-GgCGCCGuUCG-----------GCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 4388 0.67 0.555579
Target:  5'- ---cUCCCcggcgcggggguCCGCGGC--GCgGCCCGGg -3'
miRNA:   3'- gacaAGGG------------GGCGCCGuuCGgCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 52374 0.67 0.563242
Target:  5'- -cGcgCCCCCggggcccgcggggGCGGCGGGCgccgccgCGCCCGa -3'
miRNA:   3'- gaCaaGGGGG-------------CGCCGUUCG-------GCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 112582 0.66 0.593172
Target:  5'- ---cUCgCCCGCgGGCuucguggAGGCCGCCgCGGc -3'
miRNA:   3'- gacaAGgGGGCG-CCG-------UUCGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 109224 0.66 0.593172
Target:  5'- ---cUCCCgCCcCGGCGcagacccAGCCGCCgCGGu -3'
miRNA:   3'- gacaAGGG-GGcGCCGU-------UCGGCGG-GCC- -5'
29398 5' -62.7 NC_006151.1 + 25446 0.66 0.58445
Target:  5'- ----cUCCCCGCGGCcgcCCGCCCc- -3'
miRNA:   3'- gacaaGGGGGCGCCGuucGGCGGGcc -5'
29398 5' -62.7 NC_006151.1 + 107043 0.66 0.58445
Target:  5'- ----gCCCCUGgcCGGCGAGCCgGCCUGc -3'
miRNA:   3'- gacaaGGGGGC--GCCGUUCGG-CGGGCc -5'
29398 5' -62.7 NC_006151.1 + 45264 0.66 0.58445
Target:  5'- cCUGUcccagUCCCCCgucggggugaGCGGC-GGUCGuCCCGa -3'
miRNA:   3'- -GACA-----AGGGGG----------CGCCGuUCGGC-GGGCc -5'
29398 5' -62.7 NC_006151.1 + 28315 0.66 0.58445
Target:  5'- -cGcgUCCCCGgGGCGcccGCC-CCCGGg -3'
miRNA:   3'- gaCaaGGGGGCgCCGUu--CGGcGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 13938 0.66 0.58445
Target:  5'- ----aCCCCgGgGGCGGGCgC-CCCGGg -3'
miRNA:   3'- gacaaGGGGgCgCCGUUCG-GcGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 77520 0.66 0.58445
Target:  5'- gCUGgcgcgCCUcggCCGCGcGUggGCCGCCCc- -3'
miRNA:   3'- -GACaa---GGG---GGCGC-CGuuCGGCGGGcc -5'
29398 5' -62.7 NC_006151.1 + 133303 0.66 0.583482
Target:  5'- -gGUUCUCCCcggggGCGGCccgugucGAGgCGCgCCGGg -3'
miRNA:   3'- gaCAAGGGGG-----CGCCG-------UUCgGCG-GGCC- -5'
29398 5' -62.7 NC_006151.1 + 21452 0.66 0.582514
Target:  5'- gUGgcCCCCgGCGGCGuggucccgcgucGCCGgCUCGGg -3'
miRNA:   3'- gACaaGGGGgCGCCGUu-----------CGGC-GGGCC- -5'
29398 5' -62.7 NC_006151.1 + 36883 0.67 0.578648
Target:  5'- -gGcgCCCCCGCagagacagccccgccGGC--GCCGCgCCGGa -3'
miRNA:   3'- gaCaaGGGGGCG---------------CCGuuCGGCG-GGCC- -5'
29398 5' -62.7 NC_006151.1 + 87500 0.67 0.574787
Target:  5'- ----gCCCCCGUucaGGCc-GCCGCcCCGGc -3'
miRNA:   3'- gacaaGGGGGCG---CCGuuCGGCG-GGCC- -5'
29398 5' -62.7 NC_006151.1 + 48269 0.67 0.574787
Target:  5'- ----aCCaCCCGCugcugGGCcucGAGCCGCCCGu -3'
miRNA:   3'- gacaaGG-GGGCG-----CCG---UUCGGCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 78126 0.67 0.573823
Target:  5'- -----aUCCUGCGGCGGGCCGCgggcgccUCGGa -3'
miRNA:   3'- gacaagGGGGCGCCGUUCGGCG-------GGCC- -5'
29398 5' -62.7 NC_006151.1 + 109411 0.67 0.564202
Target:  5'- ----aCCUUCGCGGCcGGCCGCaccaccgCCGGc -3'
miRNA:   3'- gacaaGGGGGCGCCGuUCGGCG-------GGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.