miRNA display CGI


Results 41 - 60 of 204 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29399 5' -60.5 NC_006151.1 + 85151 0.66 0.731453
Target:  5'- aCCgCGUGCGGcagggggccGGCgCCgCGGGCGCCg -3'
miRNA:   3'- cGGaGCAUGCC---------CCG-GGaGUUCGCGGg -5'
29399 5' -60.5 NC_006151.1 + 70629 0.66 0.731453
Target:  5'- uCCUCG-GCGGcgccguGGCCgCgcgCgAGGCGCCCg -3'
miRNA:   3'- cGGAGCaUGCC------CCGG-Ga--G-UUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 50708 0.66 0.712306
Target:  5'- cGCCUCGgcgACGGccGCCCcggcggUCcAGCuGCCCc -3'
miRNA:   3'- -CGGAGCa--UGCCc-CGGG------AGuUCG-CGGG- -5'
29399 5' -60.5 NC_006151.1 + 81190 0.66 0.712306
Target:  5'- cGCCgagcgUGUACGccGGGCCgCagucCGGGCGCCg -3'
miRNA:   3'- -CGGa----GCAUGC--CCCGG-Ga---GUUCGCGGg -5'
29399 5' -60.5 NC_006151.1 + 137614 0.66 0.716158
Target:  5'- gGCg-CGgGCGGGgaccccggcgccuccGCCCUCGuccGCGCCCc -3'
miRNA:   3'- -CGgaGCaUGCCC---------------CGGGAGUu--CGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 23349 0.66 0.721916
Target:  5'- uUCUCG-GCGGcGGUcacguucuCC-CAGGCGCCCu -3'
miRNA:   3'- cGGAGCaUGCC-CCG--------GGaGUUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 55077 0.66 0.721916
Target:  5'- gGgCUCGgccGCGGcGCgCCUCGuGCGCCUc -3'
miRNA:   3'- -CgGAGCa--UGCCcCG-GGAGUuCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 65920 0.66 0.721916
Target:  5'- uCCUCGU-CGGGcGCCC-CGccGCcgGCCCa -3'
miRNA:   3'- cGGAGCAuGCCC-CGGGaGUu-CG--CGGG- -5'
29399 5' -60.5 NC_006151.1 + 85084 0.66 0.721916
Target:  5'- cGCCU-GUACGuGGGCaaccggcacuaCUCG-GCGCUCg -3'
miRNA:   3'- -CGGAgCAUGC-CCCGg----------GAGUuCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 141842 0.66 0.721916
Target:  5'- cGCgCUCGacgcgaGGGGCUCgcgccGCGCCCu -3'
miRNA:   3'- -CG-GAGCaug---CCCCGGGaguu-CGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 137260 0.66 0.721916
Target:  5'- cGCCUCGcGCGcccGGuGCCCgCGGGCacGCUCg -3'
miRNA:   3'- -CGGAGCaUGC---CC-CGGGaGUUCG--CGGG- -5'
29399 5' -60.5 NC_006151.1 + 38658 0.66 0.7286
Target:  5'- gGCCaccgCG-ACgacgaagaggaccgGGGGCCCcggcgCAAGCGCCg -3'
miRNA:   3'- -CGGa---GCaUG--------------CCCCGGGa----GUUCGCGGg -5'
29399 5' -60.5 NC_006151.1 + 64954 0.66 0.731453
Target:  5'- gGCCgCGcUGCGGGcGCaggcCGAGCGCCa -3'
miRNA:   3'- -CGGaGC-AUGCCC-CGgga-GUUCGCGGg -5'
29399 5' -60.5 NC_006151.1 + 4736 0.67 0.683126
Target:  5'- gGCCUCGUGCuGcuUCCUCGAGUcCCCc -3'
miRNA:   3'- -CGGAGCAUGcCccGGGAGUUCGcGGG- -5'
29399 5' -60.5 NC_006151.1 + 13985 0.67 0.683126
Target:  5'- gGCCcgCGUcccCGGGGCCCacgugUGAG-GCCCc -3'
miRNA:   3'- -CGGa-GCAu--GCCCCGGGa----GUUCgCGGG- -5'
29399 5' -60.5 NC_006151.1 + 36607 0.67 0.683126
Target:  5'- aGCCUCccccgccGCcGGGCCgguCUC-GGCGCCCg -3'
miRNA:   3'- -CGGAGca-----UGcCCCGG---GAGuUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 83760 0.67 0.683126
Target:  5'- cGCCaUCGgcuCGGGcacguacagcGCCCcgcCGAGCGCCa -3'
miRNA:   3'- -CGG-AGCau-GCCC----------CGGGa--GUUCGCGGg -5'
29399 5' -60.5 NC_006151.1 + 132664 0.67 0.683126
Target:  5'- aCCUCGUccGCGGaGGCCgaCAgcaugaccaGGCGCgCg -3'
miRNA:   3'- cGGAGCA--UGCC-CCGGgaGU---------UCGCGgG- -5'
29399 5' -60.5 NC_006151.1 + 135081 0.67 0.683126
Target:  5'- uCCUCGggcgggggcgGCGGGGCCgggCGGGCGgCg -3'
miRNA:   3'- cGGAGCa---------UGCCCCGGga-GUUCGCgGg -5'
29399 5' -60.5 NC_006151.1 + 117801 0.67 0.683126
Target:  5'- cGCC-CGgcgggGCGGGGCCCcacgcuUUAAGa-CCCg -3'
miRNA:   3'- -CGGaGCa----UGCCCCGGG------AGUUCgcGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.