miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2940 3' -56.1 NC_001493.1 + 107070 0.67 0.85291
Target:  5'- ---gGUCgACCGCcGgGGCGCCCGCu- -3'
miRNA:   3'- cuuaUAG-UGGUGcCgCUGCGGGCGcc -5'
2940 3' -56.1 NC_001493.1 + 89637 0.67 0.844996
Target:  5'- ---aGUCGCgCACGGCGGCGUUCucuaGGg -3'
miRNA:   3'- cuuaUAGUG-GUGCCGCUGCGGGcg--CC- -5'
2940 3' -56.1 NC_001493.1 + 112308 0.67 0.844996
Target:  5'- cGAGUugGUUGCCGgGGUGGuaCCCGCGGc -3'
miRNA:   3'- -CUUA--UAGUGGUgCCGCUgcGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 114317 0.67 0.83689
Target:  5'- -cGUGUCGCaucCGGUGGacCGCCgGCGGc -3'
miRNA:   3'- cuUAUAGUGgu-GCCGCU--GCGGgCGCC- -5'
2940 3' -56.1 NC_001493.1 + 56735 0.68 0.823538
Target:  5'- gGAGUAUCGCCGcCGucugauuacacaacaGUGugGCCCGaGGu -3'
miRNA:   3'- -CUUAUAGUGGU-GC---------------CGCugCGGGCgCC- -5'
2940 3' -56.1 NC_001493.1 + 126442 0.68 0.82013
Target:  5'- -uGUcgCACC-CGGgGAgGCCCGUGu -3'
miRNA:   3'- cuUAuaGUGGuGCCgCUgCGGGCGCc -5'
2940 3' -56.1 NC_001493.1 + 10888 0.68 0.82013
Target:  5'- -uGUcgCACC-CGGgGAgGCCCGUGu -3'
miRNA:   3'- cuUAuaGUGGuGCCgCUgCGGGCGCc -5'
2940 3' -56.1 NC_001493.1 + 63096 0.68 0.82013
Target:  5'- -----cCACgACGGCGAaGCCCaCGGg -3'
miRNA:   3'- cuuauaGUGgUGCCGCUgCGGGcGCC- -5'
2940 3' -56.1 NC_001493.1 + 62934 0.68 0.82013
Target:  5'- -----cCACgACGGCGAaGCCCaCGGg -3'
miRNA:   3'- cuuauaGUGgUGCCGCUgCGGGcGCC- -5'
2940 3' -56.1 NC_001493.1 + 62892 0.68 0.82013
Target:  5'- -----cCACgACGGCGAaGCCCaCGGg -3'
miRNA:   3'- cuuauaGUGgUGCCGCUgCGGGcGCC- -5'
2940 3' -56.1 NC_001493.1 + 62850 0.68 0.82013
Target:  5'- -----cCACgACGGCGAaGCCCaCGGg -3'
miRNA:   3'- cuuauaGUGgUGCCGCUgCGGGcGCC- -5'
2940 3' -56.1 NC_001493.1 + 63018 0.68 0.82013
Target:  5'- -----cCACgACGGCGAaGCCCaCGGg -3'
miRNA:   3'- cuuauaGUGgUGCCGCUgCGGGcGCC- -5'
2940 3' -56.1 NC_001493.1 + 108360 0.68 0.802692
Target:  5'- aGGUG-CACguUGGUGACGCCCaCGGu -3'
miRNA:   3'- cUUAUaGUGguGCCGCUGCGGGcGCC- -5'
2940 3' -56.1 NC_001493.1 + 79567 0.68 0.793738
Target:  5'- -uGUAUCACCuCGGCcgUGCCCaCGGa -3'
miRNA:   3'- cuUAUAGUGGuGCCGcuGCGGGcGCC- -5'
2940 3' -56.1 NC_001493.1 + 81622 0.68 0.793738
Target:  5'- cGggUG-CACCugGGCGAcacugaCGCCCcgaccGUGGc -3'
miRNA:   3'- -CuuAUaGUGGugCCGCU------GCGGG-----CGCC- -5'
2940 3' -56.1 NC_001493.1 + 132099 0.68 0.78464
Target:  5'- aGggUGcC-CCAgGGCGAgagGCCCGUGGa -3'
miRNA:   3'- -CuuAUaGuGGUgCCGCUg--CGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 16545 0.68 0.78464
Target:  5'- aGggUGcC-CCAgGGCGAgagGCCCGUGGa -3'
miRNA:   3'- -CuuAUaGuGGUgCCGCUg--CGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 98985 0.69 0.775406
Target:  5'- ----uUCGCU-CGGCGGCGCCUGauaGGu -3'
miRNA:   3'- cuuauAGUGGuGCCGCUGCGGGCg--CC- -5'
2940 3' -56.1 NC_001493.1 + 28314 0.69 0.746977
Target:  5'- ---gAUCACCgagGCGGCGAacaCGUgUGCGGa -3'
miRNA:   3'- cuuaUAGUGG---UGCCGCU---GCGgGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 96255 0.69 0.746977
Target:  5'- aAAUAUCggaugaAUCGgGGCcguaGCGCCCGCGGg -3'
miRNA:   3'- cUUAUAG------UGGUgCCGc---UGCGGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.