miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2940 5' -53.8 NC_001493.1 + 95742 0.66 0.955067
Target:  5'- uCGCCcgguGUGAugAUAUCACCGCGGCucaucAUGUa -3'
miRNA:   3'- -GUGG----CGCU--UAUAGUGGUGCCGc----UGCG- -5'
2940 5' -53.8 NC_001493.1 + 49224 0.66 0.951022
Target:  5'- gCACCGCGuucaguUGUUgggccaACCACGGUuuGCGCc -3'
miRNA:   3'- -GUGGCGCuu----AUAG------UGGUGCCGc-UGCG- -5'
2940 5' -53.8 NC_001493.1 + 21407 0.66 0.951022
Target:  5'- uGCgGCGAugcggcuUCACCAgGGgCGGCGg -3'
miRNA:   3'- gUGgCGCUuau----AGUGGUgCC-GCUGCg -5'
2940 5' -53.8 NC_001493.1 + 60071 0.66 0.951022
Target:  5'- gGCCGCGAAaccgGUgACCGugacggguUGGCGAgGUc -3'
miRNA:   3'- gUGGCGCUUa---UAgUGGU--------GCCGCUgCG- -5'
2940 5' -53.8 NC_001493.1 + 24070 0.66 0.951022
Target:  5'- gGCCGUGAGUcacacacuccuGUuaCACCACggggggcuGGCGAUGUg -3'
miRNA:   3'- gUGGCGCUUA-----------UA--GUGGUG--------CCGCUGCG- -5'
2940 5' -53.8 NC_001493.1 + 48600 0.66 0.950605
Target:  5'- uCACUGCGAAUcgaccugaacgccGUCugAUCACGcgaucgugacGCGGCGCa -3'
miRNA:   3'- -GUGGCGCUUA-------------UAG--UGGUGC----------CGCUGCG- -5'
2940 5' -53.8 NC_001493.1 + 26614 0.66 0.946741
Target:  5'- uCACCgGUGAccGUGUCAUCACGGUca-GCc -3'
miRNA:   3'- -GUGG-CGCU--UAUAGUGGUGCCGcugCG- -5'
2940 5' -53.8 NC_001493.1 + 85918 0.66 0.946741
Target:  5'- cCACaauaaGaCGAuaaagcuUCACCACGGaGACGCa -3'
miRNA:   3'- -GUGg----C-GCUuau----AGUGGUGCCgCUGCG- -5'
2940 5' -53.8 NC_001493.1 + 63791 0.67 0.942219
Target:  5'- --aUGUGGugGUCACCGCGGUGuCGUu -3'
miRNA:   3'- gugGCGCUuaUAGUGGUGCCGCuGCG- -5'
2940 5' -53.8 NC_001493.1 + 12964 0.67 0.942219
Target:  5'- cCGCCGcCGA--GUCGCCAuCGGUucGGuCGCg -3'
miRNA:   3'- -GUGGC-GCUuaUAGUGGU-GCCG--CU-GCG- -5'
2940 5' -53.8 NC_001493.1 + 99074 0.67 0.942219
Target:  5'- aCACgGUGAAaaccAUCACggaCGCGcGCGAUGCg -3'
miRNA:   3'- -GUGgCGCUUa---UAGUG---GUGC-CGCUGCG- -5'
2940 5' -53.8 NC_001493.1 + 37667 0.67 0.942219
Target:  5'- gACCGggaCGGAUggCACCGuguCGGCGGcCGCc -3'
miRNA:   3'- gUGGC---GCUUAuaGUGGU---GCCGCU-GCG- -5'
2940 5' -53.8 NC_001493.1 + 64424 0.67 0.942219
Target:  5'- aCACCGa-GAUGuacUCGCCACGG--GCGCg -3'
miRNA:   3'- -GUGGCgcUUAU---AGUGGUGCCgcUGCG- -5'
2940 5' -53.8 NC_001493.1 + 31188 0.67 0.942219
Target:  5'- aCAUCuuGAAUAcCGCCGCGGCcGCGg -3'
miRNA:   3'- -GUGGcgCUUAUaGUGGUGCCGcUGCg -5'
2940 5' -53.8 NC_001493.1 + 60049 0.67 0.937456
Target:  5'- gACgGUGAcgAg---CACGGCGGCGCa -3'
miRNA:   3'- gUGgCGCUuaUagugGUGCCGCUGCG- -5'
2940 5' -53.8 NC_001493.1 + 110580 0.67 0.937456
Target:  5'- uCGCCGCGAuGUGUgGCgGgGG-GugGCg -3'
miRNA:   3'- -GUGGCGCU-UAUAgUGgUgCCgCugCG- -5'
2940 5' -53.8 NC_001493.1 + 111552 0.67 0.937456
Target:  5'- -gUCGCGAGcgGUCuCCGCGaGCaGCGCg -3'
miRNA:   3'- guGGCGCUUa-UAGuGGUGC-CGcUGCG- -5'
2940 5' -53.8 NC_001493.1 + 9796 0.67 0.937456
Target:  5'- aACCGCGGGgacGUCGagcuCGGCGcggGCGCa -3'
miRNA:   3'- gUGGCGCUUa--UAGUggu-GCCGC---UGCG- -5'
2940 5' -53.8 NC_001493.1 + 125350 0.67 0.937456
Target:  5'- aACCGCGGGgacGUCGagcuCGGCGcggGCGCa -3'
miRNA:   3'- gUGGCGCUUa--UAGUggu-GCCGC---UGCG- -5'
2940 5' -53.8 NC_001493.1 + 75666 0.67 0.937456
Target:  5'- aCGCCG-GGAUAg--UCAUGGCGACGg -3'
miRNA:   3'- -GUGGCgCUUAUaguGGUGCCGCUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.