miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29400 3' -66.3 NC_006151.1 + 118218 1.08 0.000461
Target:  5'- gUGGUGGCGGGCGCCCGGACCACCGGGc -3'
miRNA:   3'- -ACCACCGCCCGCGGGCCUGGUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 20132 0.86 0.020708
Target:  5'- cUGGggGGCGGGCGCCgcgggggcggcgcgUGGACCGCCGGGc -3'
miRNA:   3'- -ACCa-CCGCCCGCGG--------------GCCUGGUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 13942 0.81 0.044736
Target:  5'- cGGgGGCGGGCGCCCcggGGACgCGCCGGc -3'
miRNA:   3'- aCCaCCGCCCGCGGG---CCUG-GUGGCCc -5'
29400 3' -66.3 NC_006151.1 + 5859 0.78 0.073849
Target:  5'- aGGgGGaCGaGCGCCCgGGGCCGCCGGGg -3'
miRNA:   3'- aCCaCC-GCcCGCGGG-CCUGGUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 5013 0.77 0.083592
Target:  5'- gGGgccgGGCGGGCuCCgGGGCCgggGCCGGGg -3'
miRNA:   3'- aCCa---CCGCCCGcGGgCCUGG---UGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 103537 0.77 0.090014
Target:  5'- cGGcgcgcUGGUGGGCGCCgGGcaGCCGCuCGGGg -3'
miRNA:   3'- aCC-----ACCGCCCGCGGgCC--UGGUG-GCCC- -5'
29400 3' -66.3 NC_006151.1 + 69282 0.77 0.090014
Target:  5'- -aGUGGCGGcGCGCCaccagggacaCGGGCCGCCGGc -3'
miRNA:   3'- acCACCGCC-CGCGG----------GCCUGGUGGCCc -5'
29400 3' -66.3 NC_006151.1 + 127386 0.77 0.094553
Target:  5'- gGGUGGCGGGgGCCgCGG-CCGagucgaCGGGa -3'
miRNA:   3'- aCCACCGCCCgCGG-GCCuGGUg-----GCCC- -5'
29400 3' -66.3 NC_006151.1 + 21518 0.76 0.10177
Target:  5'- cGG-GGCGGGCucgggcuucgGCCgGGGCCgggGCCGGGg -3'
miRNA:   3'- aCCaCCGCCCG----------CGGgCCUGG---UGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 105753 0.76 0.104289
Target:  5'- cGcGUGGCGGcGCGCCUGGGCgACCGcGa -3'
miRNA:   3'- aC-CACCGCC-CGCGGGCCUGgUGGC-Cc -5'
29400 3' -66.3 NC_006151.1 + 2298 0.75 0.1175
Target:  5'- cGGcGGCGacGGCGCCCGGggucagcACCAgCGGGg -3'
miRNA:   3'- aCCaCCGC--CCGCGGGCC-------UGGUgGCCC- -5'
29400 3' -66.3 NC_006151.1 + 133371 0.75 0.123627
Target:  5'- gUGGUGGUGguGGCGgCCGGggcgGCgGCCGGGg -3'
miRNA:   3'- -ACCACCGC--CCGCgGGCC----UGgUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 46715 0.75 0.126647
Target:  5'- aUGGUGccuCGGGgGCCgGGGCCGgcCCGGGg -3'
miRNA:   3'- -ACCACc--GCCCgCGGgCCUGGU--GGCCC- -5'
29400 3' -66.3 NC_006151.1 + 55982 0.75 0.132895
Target:  5'- aGGUGcGCGaGGUGCCCGGGCUgaucCCGGu -3'
miRNA:   3'- aCCAC-CGC-CCGCGGGCCUGGu---GGCCc -5'
29400 3' -66.3 NC_006151.1 + 45539 0.74 0.135147
Target:  5'- cGGgagGGCccgcuucccacgacGGcGCGCCCGGGCCAucgucCCGGGa -3'
miRNA:   3'- aCCa--CCG--------------CC-CGCGGGCCUGGU-----GGCCC- -5'
29400 3' -66.3 NC_006151.1 + 1810 0.74 0.136124
Target:  5'- gGGaGGCaGGCGCCgGGgaggcaagcGCCGCCGGGc -3'
miRNA:   3'- aCCaCCGcCCGCGGgCC---------UGGUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 18754 0.74 0.136124
Target:  5'- cGG-GGCcccacgGGGUGCCCgGGGCCcggGCCGGGg -3'
miRNA:   3'- aCCaCCG------CCCGCGGG-CCUGG---UGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 113106 0.74 0.136124
Target:  5'- cGGgGGCGGG-GCCgCGGacgcggacGCCGCCGGGc -3'
miRNA:   3'- aCCaCCGCCCgCGG-GCC--------UGGUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 38395 0.74 0.136124
Target:  5'- cGGcGGCGGGCGCCCccuccGGCCuccccggcuCCGGGc -3'
miRNA:   3'- aCCaCCGCCCGCGGGc----CUGGu--------GGCCC- -5'
29400 3' -66.3 NC_006151.1 + 96908 0.74 0.139425
Target:  5'- cUGGgcggGGCGGGacaaGCCgGGACgGgCCGGGa -3'
miRNA:   3'- -ACCa---CCGCCCg---CGGgCCUGgU-GGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.