miRNA display CGI


Results 21 - 40 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29400 3' -66.3 NC_006151.1 + 63788 0.66 0.475038
Target:  5'- ---aGGCGGggucggccgucgccaGCGCcucgCCGGGCC-CCGGGg -3'
miRNA:   3'- accaCCGCC---------------CGCG----GGCCUGGuGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 19303 0.66 0.471549
Target:  5'- cGGc-GCGGGCGgCCGGucgcCCACCGc- -3'
miRNA:   3'- aCCacCGCCCGCgGGCCu---GGUGGCcc -5'
29400 3' -66.3 NC_006151.1 + 39952 0.66 0.471549
Target:  5'- cUGGUGcugacccCGGGCGCCgucGCCGCCGcGGg -3'
miRNA:   3'- -ACCACc------GCCCGCGGgccUGGUGGC-CC- -5'
29400 3' -66.3 NC_006151.1 + 60394 0.66 0.471549
Target:  5'- cGGUGGUguagacgaGGGCGCgCaCGGcCCAgCGGc -3'
miRNA:   3'- aCCACCG--------CCCGCG-G-GCCuGGUgGCCc -5'
29400 3' -66.3 NC_006151.1 + 96734 0.66 0.471549
Target:  5'- aGGcGGCGGGCGCgacgaCGGagGCCAUgGcGGc -3'
miRNA:   3'- aCCaCCGCCCGCGg----GCC--UGGUGgC-CC- -5'
29400 3' -66.3 NC_006151.1 + 7027 0.66 0.471549
Target:  5'- cGGcGGCcaucucGGCucGCCCGGGCCAauGGGc -3'
miRNA:   3'- aCCaCCGc-----CCG--CGGGCCUGGUggCCC- -5'
29400 3' -66.3 NC_006151.1 + 106505 0.66 0.471549
Target:  5'- cGGcUGGCGcGCGCcgugCCGGGCgCGCUGGc -3'
miRNA:   3'- aCC-ACCGCcCGCG----GGCCUG-GUGGCCc -5'
29400 3' -66.3 NC_006151.1 + 18684 0.66 0.471549
Target:  5'- gGGUuccaCGGGCGCgCGGGCggCGCCGGc -3'
miRNA:   3'- aCCAcc--GCCCGCGgGCCUG--GUGGCCc -5'
29400 3' -66.3 NC_006151.1 + 64461 0.66 0.462885
Target:  5'- aGGaUGGCGGcGCGCgCCGccGCgGCgGGGa -3'
miRNA:   3'- aCC-ACCGCC-CGCG-GGCc-UGgUGgCCC- -5'
29400 3' -66.3 NC_006151.1 + 141596 0.66 0.462885
Target:  5'- ---gGGCGaGaGcCGCCCGGcgagGCUGCCGGGa -3'
miRNA:   3'- accaCCGC-C-C-GCGGGCC----UGGUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 11040 0.66 0.462885
Target:  5'- cGGccGGcCGGGgGCCCGG-CCuggACgCGGGc -3'
miRNA:   3'- aCCa-CC-GCCCgCGGGCCuGG---UG-GCCC- -5'
29400 3' -66.3 NC_006151.1 + 50854 0.66 0.462885
Target:  5'- ---cGGCGGccgcccucccGCGCCCccGGACCccgucCCGGGg -3'
miRNA:   3'- accaCCGCC----------CGCGGG--CCUGGu----GGCCC- -5'
29400 3' -66.3 NC_006151.1 + 114921 0.66 0.462885
Target:  5'- cGGccccGGCGucGCGCUCGG-CCuCCGGGg -3'
miRNA:   3'- aCCa---CCGCc-CGCGGGCCuGGuGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 134829 0.66 0.462885
Target:  5'- cGGUGGCGaccGCGCgCGcACaCACgCGGGg -3'
miRNA:   3'- aCCACCGCc--CGCGgGCcUG-GUG-GCCC- -5'
29400 3' -66.3 NC_006151.1 + 103674 0.66 0.460302
Target:  5'- ---aGGCGGcGCGCgCGGcgggggugcugcgcGCCGCCGuGGa -3'
miRNA:   3'- accaCCGCC-CGCGgGCC--------------UGGUGGC-CC- -5'
29400 3' -66.3 NC_006151.1 + 27314 0.66 0.460302
Target:  5'- gGGUcgaGGCGGGgGacggggggcugcucCCCgGGACCggggucguggGCCGGGg -3'
miRNA:   3'- aCCA---CCGCCCgC--------------GGG-CCUGG----------UGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 118159 0.66 0.457727
Target:  5'- cGGUGGCGccgcuGGUGCgCGGccugACCgucgaggccggcuucGCCGGGc -3'
miRNA:   3'- aCCACCGC-----CCGCGgGCC----UGG---------------UGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 37852 0.66 0.454306
Target:  5'- aUGGccuacccgGGCc-GCGCCgCGGACCcccgcGCCGGGg -3'
miRNA:   3'- -ACCa-------CCGccCGCGG-GCCUGG-----UGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 8647 0.66 0.454306
Target:  5'- cGGUGGUGcggguguuacuGGCGauaCCGGuACCgacgguggugGCCGGGc -3'
miRNA:   3'- aCCACCGC-----------CCGCg--GGCC-UGG----------UGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 139654 0.66 0.454306
Target:  5'- gGGUcgcGGCGGGCGCgCCgcccgacaGGcCCugCGGc -3'
miRNA:   3'- aCCA---CCGCCCGCG-GG--------CCuGGugGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.