miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29400 5' -55.3 NC_006151.1 + 142114 0.66 0.91484
Target:  5'- -gCugGgUGAAGCccaccgcgaggaUGGCGCCCGauGCCu -3'
miRNA:   3'- gaGugCgACUUCG------------ACUGCGGGU--UGGu -5'
29400 5' -55.3 NC_006151.1 + 139203 0.66 0.91484
Target:  5'- --gGCGCUGGAGCUccuggcggcGACGCU--GCCGc -3'
miRNA:   3'- gagUGCGACUUCGA---------CUGCGGguUGGU- -5'
29400 5' -55.3 NC_006151.1 + 85839 0.66 0.91484
Target:  5'- gUgGCGCUGGAGCUGcagaaccgccaGCGCgugaCGGCCc -3'
miRNA:   3'- gAgUGCGACUUCGAC-----------UGCGg---GUUGGu -5'
29400 5' -55.3 NC_006151.1 + 39790 0.66 0.913649
Target:  5'- -cCGCGCggccaaccgcugGggGCUcGGCGCCCcGCUg -3'
miRNA:   3'- gaGUGCGa-----------CuuCGA-CUGCGGGuUGGu -5'
29400 5' -55.3 NC_006151.1 + 101437 0.66 0.908786
Target:  5'- uUCACGCUGGucguGGUcGGCGCCgugGGCCu -3'
miRNA:   3'- gAGUGCGACU----UCGaCUGCGGg--UUGGu -5'
29400 5' -55.3 NC_006151.1 + 112455 0.66 0.908786
Target:  5'- -cCAUggGCUGGAGCgagGACGCCUucgaggcGCCGu -3'
miRNA:   3'- gaGUG--CGACUUCGa--CUGCGGGu------UGGU- -5'
29400 5' -55.3 NC_006151.1 + 49581 0.66 0.920649
Target:  5'- -cCGCGCUc--GCcGGCGcCCCGGCCAg -3'
miRNA:   3'- gaGUGCGAcuuCGaCUGC-GGGUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 39920 0.66 0.908786
Target:  5'- --gGCuGCUGGAGCccGACGCCgaGGCCGc -3'
miRNA:   3'- gagUG-CGACUUCGa-CUGCGGg-UUGGU- -5'
29400 5' -55.3 NC_006151.1 + 55537 0.66 0.902489
Target:  5'- aUCACGCgcgccauGGGCgacGACGCCUAcgugGCCAa -3'
miRNA:   3'- gAGUGCGac-----UUCGa--CUGCGGGU----UGGU- -5'
29400 5' -55.3 NC_006151.1 + 134635 0.66 0.902489
Target:  5'- ----aGCUGguGCUGACGCgCgAGCCGc -3'
miRNA:   3'- gagugCGACuuCGACUGCG-GgUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 121312 0.66 0.902489
Target:  5'- --gGCGCUGGAGCguggaGGCGgCC-GCCGa -3'
miRNA:   3'- gagUGCGACUUCGa----CUGCgGGuUGGU- -5'
29400 5' -55.3 NC_006151.1 + 71814 0.66 0.902489
Target:  5'- gCUCGCGCgUGgcGCU---GCCCAGCUg -3'
miRNA:   3'- -GAGUGCG-ACuuCGAcugCGGGUUGGu -5'
29400 5' -55.3 NC_006151.1 + 86898 0.66 0.902489
Target:  5'- -aCAaccaGCUGGuggucaaccAGCgcccGGCGCCCAGCCu -3'
miRNA:   3'- gaGUg---CGACU---------UCGa---CUGCGGGUUGGu -5'
29400 5' -55.3 NC_006151.1 + 80934 0.66 0.898595
Target:  5'- gUCGgGUUGAAGCUGgggaugguggaguugGCGCC-GGCCAu -3'
miRNA:   3'- gAGUgCGACUUCGAC---------------UGCGGgUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 125448 0.66 0.895951
Target:  5'- gUCGCGcCUGAaccccAGCgccGugGCCaCGGCCGc -3'
miRNA:   3'- gAGUGC-GACU-----UCGa--CugCGG-GUUGGU- -5'
29400 5' -55.3 NC_006151.1 + 122308 0.66 0.895951
Target:  5'- cCUCACGCgGcAGCUGGCGgugcgcguggacCCCGaggacgugGCCAa -3'
miRNA:   3'- -GAGUGCGaCuUCGACUGC------------GGGU--------UGGU- -5'
29400 5' -55.3 NC_006151.1 + 83091 0.66 0.895951
Target:  5'- -cCACGCgUGcaccucGAGCgGGCGCCCGcGCCGg -3'
miRNA:   3'- gaGUGCG-AC------UUCGaCUGCGGGU-UGGU- -5'
29400 5' -55.3 NC_006151.1 + 140175 0.66 0.895951
Target:  5'- gCUCACGCUGcgcacGCUgGAC-CCCAucgugGCCAc -3'
miRNA:   3'- -GAGUGCGACuu---CGA-CUGcGGGU-----UGGU- -5'
29400 5' -55.3 NC_006151.1 + 118951 0.66 0.895951
Target:  5'- --gGCGCUGucGCUGgagGCGCUCGucGCCGc -3'
miRNA:   3'- gagUGCGACuuCGAC---UGCGGGU--UGGU- -5'
29400 5' -55.3 NC_006151.1 + 99043 0.66 0.893943
Target:  5'- cCUCGCGCacgggGAcgcguacgugcgcgAGCUG-CGCCCGggcACCGu -3'
miRNA:   3'- -GAGUGCGa----CU--------------UCGACuGCGGGU---UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.