Results 41 - 60 of 93 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 104721 | 0.67 | 0.95354 |
Target: 5'- gCugCGCGGCGCcGUGAccuaccuggagcGCUUcGACUUu -3' miRNA: 3'- -GugGCGCCGCGcUACU------------UGAAcUUGAG- -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 73040 | 0.67 | 0.95354 |
Target: 5'- gGCgGUGGCGCGGUGGGggUGcGCg- -3' miRNA: 3'- gUGgCGCCGCGCUACUUgaACuUGag -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 37404 | 0.67 | 0.95354 |
Target: 5'- cUACgGCGGCGCcggGGACUcccgcgagGGGCUCu -3' miRNA: 3'- -GUGgCGCCGCGcuaCUUGAa-------CUUGAG- -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 4220 | 0.67 | 0.95354 |
Target: 5'- gGCCGgGGCGCGGgcGGGCgcGGGCa- -3' miRNA: 3'- gUGGCgCCGCGCUa-CUUGaaCUUGag -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 19640 | 0.67 | 0.949346 |
Target: 5'- uCGCCGCGcGCGUcgagGGUGAAgUUGGcgccCUCg -3' miRNA: 3'- -GUGGCGC-CGCG----CUACUUgAACUu---GAG- -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 112605 | 0.67 | 0.944908 |
Target: 5'- cCGCCGCGGCGcCGcUGGcGCU-GGACg- -3' miRNA: 3'- -GUGGCGCCGC-GCuACU-UGAaCUUGag -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 130852 | 0.67 | 0.944908 |
Target: 5'- uCGCCgucgGCGGCGCGGgcgGGACcgcagUGGGCg- -3' miRNA: 3'- -GUGG----CGCCGCGCUa--CUUGa----ACUUGag -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 77618 | 0.67 | 0.944908 |
Target: 5'- -uCUGCGGcCGCGcgGAGCU-GGACg- -3' miRNA: 3'- guGGCGCC-GCGCuaCUUGAaCUUGag -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 91740 | 0.68 | 0.906841 |
Target: 5'- aCAUCGCGGCG-GgcGAGC--GGGCUCg -3' miRNA: 3'- -GUGGCGCCGCgCuaCUUGaaCUUGAG- -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 133879 | 0.68 | 0.906841 |
Target: 5'- uCACgGCGGCgGCcGUGGGCUgauccaccgGGACUCc -3' miRNA: 3'- -GUGgCGCCG-CGcUACUUGAa--------CUUGAG- -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 40088 | 0.68 | 0.900402 |
Target: 5'- gCGCCGgGGCcggccccgGCGA-GGACggGGACUCu -3' miRNA: 3'- -GUGGCgCCG--------CGCUaCUUGaaCUUGAG- -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 133495 | 0.68 | 0.900402 |
Target: 5'- uCACCuugGCGGCGCGggGGGCgcgggagGAGC-Cg -3' miRNA: 3'- -GUGG---CGCCGCGCuaCUUGaa-----CUUGaG- -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 4793 | 0.68 | 0.913032 |
Target: 5'- gGCCGCGGCGCGGU-AGC--GGGC-Cg -3' miRNA: 3'- gUGGCGCCGCGCUAcUUGaaCUUGaG- -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 140455 | 0.68 | 0.918973 |
Target: 5'- uGCCuCGGCGgGAucaUGGACgcgcUGGACUCc -3' miRNA: 3'- gUGGcGCCGCgCU---ACUUGa---ACUUGAG- -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 2358 | 0.68 | 0.918973 |
Target: 5'- gCGCCGCGGCGCaGAaGGcGCgc-AACUCg -3' miRNA: 3'- -GUGGCGCCGCG-CUaCU-UGaacUUGAG- -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 31558 | 0.68 | 0.918973 |
Target: 5'- gCGCCGCGGUGCGc-GAACgUGA--UCa -3' miRNA: 3'- -GUGGCGCCGCGCuaCUUGaACUugAG- -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 54642 | 0.68 | 0.918973 |
Target: 5'- aGCgGCGGCGCGAgc-GCUgcgUGGACg- -3' miRNA: 3'- gUGgCGCCGCGCUacuUGA---ACUUGag -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 6291 | 0.68 | 0.924663 |
Target: 5'- gGCCGCGGCGgCGGccgccagGAGCUggcUGAAgUUg -3' miRNA: 3'- gUGGCGCCGC-GCUa------CUUGA---ACUUgAG- -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 96081 | 0.69 | 0.893718 |
Target: 5'- gCGCgCGCGGCcgGCGAaGAGCaUGAGCg- -3' miRNA: 3'- -GUG-GCGCCG--CGCUaCUUGaACUUGag -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 137174 | 0.69 | 0.886793 |
Target: 5'- aGCCgGCGGCGCaGAUGuACgUGAGC-Cg -3' miRNA: 3'- gUGG-CGCCGCG-CUACuUGaACUUGaG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home