miRNA display CGI


Results 61 - 80 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29401 5' -53.1 NC_006151.1 + 3265 0.67 0.930102
Target:  5'- gCGCCGCGGCGCGcgGcgauguGCgccaGGGCg- -3'
miRNA:   3'- -GUGGCGCCGCGCuaCu-----UGaa--CUUGag -5'
29401 5' -53.1 NC_006151.1 + 38182 0.67 0.930102
Target:  5'- gCACCGUGGCGCcgcuGGUGcGCUacagcgUGGACg- -3'
miRNA:   3'- -GUGGCGCCGCG----CUACuUGA------ACUUGag -5'
29401 5' -53.1 NC_006151.1 + 109553 0.67 0.930102
Target:  5'- gCGCCGUGGaCGUGGcccGAGCcgagGGACUCu -3'
miRNA:   3'- -GUGGCGCC-GCGCUa--CUUGaa--CUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 29602 0.67 0.935288
Target:  5'- gGCCGCGGCGgCGG-GGGCU-GGugUg -3'
miRNA:   3'- gUGGCGCCGC-GCUaCUUGAaCUugAg -5'
29401 5' -53.1 NC_006151.1 + 41490 0.67 0.935288
Target:  5'- gACCGCguGGCGCGAgggGAGCcaaugGGGCg- -3'
miRNA:   3'- gUGGCG--CCGCGCUa--CUUGaa---CUUGag -5'
29401 5' -53.1 NC_006151.1 + 106794 0.67 0.935288
Target:  5'- gGCCGCGGCGgCGGUGcuCgucgGGGCc- -3'
miRNA:   3'- gUGGCGCCGC-GCUACuuGaa--CUUGag -5'
29401 5' -53.1 NC_006151.1 + 55176 0.67 0.940223
Target:  5'- gACCGgGGCGCGcauccUGGACagcgUGGACa- -3'
miRNA:   3'- gUGGCgCCGCGCu----ACUUGa---ACUUGag -5'
29401 5' -53.1 NC_006151.1 + 27443 0.67 0.940223
Target:  5'- gCGCgGCGGaCGCGGUGggUcggGGGCg- -3'
miRNA:   3'- -GUGgCGCC-GCGCUACuuGaa-CUUGag -5'
29401 5' -53.1 NC_006151.1 + 95974 0.67 0.940223
Target:  5'- cCGCCGCGGCGCagcaGGAUggGGGC-Ca -3'
miRNA:   3'- -GUGGCGCCGCGcua-CUUGaaCUUGaG- -5'
29401 5' -53.1 NC_006151.1 + 5545 0.66 0.967956
Target:  5'- cCGCCucGCGGCgGCGGgcucgucGAGCagGGGCUCg -3'
miRNA:   3'- -GUGG--CGCCG-CGCUa------CUUGaaCUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 138627 0.66 0.967956
Target:  5'- aCGCCGCcgggGGCGCGccGGACUggGAGgccUUCa -3'
miRNA:   3'- -GUGGCG----CCGCGCuaCUUGAa-CUU---GAG- -5'
29401 5' -53.1 NC_006151.1 + 3448 0.66 0.967956
Target:  5'- cCGCCGUcgGGCGCGggGuGCUcGGGCa- -3'
miRNA:   3'- -GUGGCG--CCGCGCuaCuUGAaCUUGag -5'
29401 5' -53.1 NC_006151.1 + 97743 0.66 0.967956
Target:  5'- aGCgCGCGGUGCGG-GAACacgUG-GCUCc -3'
miRNA:   3'- gUG-GCGCCGCGCUaCUUGa--ACuUGAG- -5'
29401 5' -53.1 NC_006151.1 + 64531 0.66 0.966027
Target:  5'- cCGCCGCGGcCGCGucggGGGCggcGAggccguggcgcgccaGCUCg -3'
miRNA:   3'- -GUGGCGCC-GCGCua--CUUGaa-CU---------------UGAG- -5'
29401 5' -53.1 NC_006151.1 + 100898 0.66 0.966027
Target:  5'- gCGCCGCGGCGCGcgcgcgcccgacgacGcGAGCgcGGGCg- -3'
miRNA:   3'- -GUGGCGCCGCGC---------------UaCUUGaaCUUGag -5'
29401 5' -53.1 NC_006151.1 + 100434 0.66 0.96121
Target:  5'- gCugCGCGGCGUGAUGGcgcagACgacgGAggcGCUg -3'
miRNA:   3'- -GugGCGCCGCGCUACU-----UGaa--CU---UGAg -5'
29401 5' -53.1 NC_006151.1 + 122671 0.66 0.960849
Target:  5'- gCGCCGCGccgagguGCGCGcgGcGGCcgugGAGCUCg -3'
miRNA:   3'- -GUGGCGC-------CGCGCuaC-UUGaa--CUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 47638 0.66 0.957493
Target:  5'- gGCgGCGGCGCGcgGuACUgcAACUg -3'
miRNA:   3'- gUGgCGCCGCGCuaCuUGAacUUGAg -5'
29401 5' -53.1 NC_006151.1 + 102505 0.66 0.967956
Target:  5'- aCGCCGCGGCGCG--GGACcccGGCg- -3'
miRNA:   3'- -GUGGCGCCGCGCuaCUUGaacUUGag -5'
29401 5' -53.1 NC_006151.1 + 99084 0.66 0.957493
Target:  5'- gCACCGUGGCGCGGcgccUGcGCacGGAC-Ca -3'
miRNA:   3'- -GUGGCGCCGCGCU----ACuUGaaCUUGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.