miRNA display CGI


Results 81 - 93 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29401 5' -53.1 NC_006151.1 + 3448 0.66 0.967956
Target:  5'- cCGCCGUcgGGCGCGggGuGCUcGGGCa- -3'
miRNA:   3'- -GUGGCG--CCGCGCuaCuUGAaCUUGag -5'
29401 5' -53.1 NC_006151.1 + 97743 0.66 0.967956
Target:  5'- aGCgCGCGGUGCGG-GAACacgUG-GCUCc -3'
miRNA:   3'- gUG-GCGCCGCGCUaCUUGa--ACuUGAG- -5'
29401 5' -53.1 NC_006151.1 + 47638 0.66 0.957493
Target:  5'- gGCgGCGGCGCGcgGuACUgcAACUg -3'
miRNA:   3'- gUGgCGCCGCGCuaCuUGAacUUGAg -5'
29401 5' -53.1 NC_006151.1 + 122671 0.66 0.960849
Target:  5'- gCGCCGCGccgagguGCGCGcgGcGGCcgugGAGCUCg -3'
miRNA:   3'- -GUGGCGC-------CGCGCuaC-UUGaa--CUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 100434 0.66 0.96121
Target:  5'- gCugCGCGGCGUGAUGGcgcagACgacgGAggcGCUg -3'
miRNA:   3'- -GugGCGCCGCGCUACU-----UGaa--CU---UGAg -5'
29401 5' -53.1 NC_006151.1 + 19423 0.66 0.96121
Target:  5'- cCACCGCuccggGGUGaCGAUGGGCg---GCUCg -3'
miRNA:   3'- -GUGGCG-----CCGC-GCUACUUGaacuUGAG- -5'
29401 5' -53.1 NC_006151.1 + 122217 0.66 0.96121
Target:  5'- aGCCGU-GCGCGGUGuGCUUcgagGAGCUg -3'
miRNA:   3'- gUGGCGcCGCGCUACuUGAA----CUUGAg -5'
29401 5' -53.1 NC_006151.1 + 82616 0.66 0.96121
Target:  5'- cCGCgCGCGGgcgcCGCGGUGGGCgcgGGACc- -3'
miRNA:   3'- -GUG-GCGCC----GCGCUACUUGaa-CUUGag -5'
29401 5' -53.1 NC_006151.1 + 128830 0.66 0.964358
Target:  5'- --aCGCGGCGCucUGGgccuuguGCUUGAACg- -3'
miRNA:   3'- gugGCGCCGCGcuACU-------UGAACUUGag -5'
29401 5' -53.1 NC_006151.1 + 90436 0.66 0.964696
Target:  5'- aCGCCcauCaGCGUGAUGcAGCgggUGGACUCg -3'
miRNA:   3'- -GUGGc--GcCGCGCUAC-UUGa--ACUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 100898 0.66 0.966027
Target:  5'- gCGCCGCGGCGCGcgcgcgcccgacgacGcGAGCgcGGGCg- -3'
miRNA:   3'- -GUGGCGCCGCGC---------------UaCUUGaaCUUGag -5'
29401 5' -53.1 NC_006151.1 + 64531 0.66 0.966027
Target:  5'- cCGCCGCGGcCGCGucggGGGCggcGAggccguggcgcgccaGCUCg -3'
miRNA:   3'- -GUGGCGCC-GCGCua--CUUGaa-CU---------------UGAG- -5'
29401 5' -53.1 NC_006151.1 + 99084 0.66 0.957493
Target:  5'- gCACCGUGGCGCGGcgccUGcGCacGGAC-Ca -3'
miRNA:   3'- -GUGGCGCCGCGCU----ACuUGaaCUUGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.