Results 41 - 60 of 93 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 5545 | 0.66 | 0.967956 |
Target: 5'- cCGCCucGCGGCgGCGGgcucgucGAGCagGGGCUCg -3' miRNA: 3'- -GUGG--CGCCG-CGCUa------CUUGaaCUUGAG- -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 81566 | 0.66 | 0.970996 |
Target: 5'- gGCCGUGGUGCG--GAGCagGGuCUCg -3' miRNA: 3'- gUGGCGCCGCGCuaCUUGaaCUuGAG- -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 91146 | 0.66 | 0.970996 |
Target: 5'- nCACCugGgGGCGCGA-GAGCgucaGGCUCa -3' miRNA: 3'- -GUGG--CgCCGCGCUaCUUGaac-UUGAG- -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 106337 | 0.66 | 0.970996 |
Target: 5'- gACCGCgcgcuGGaCGCGGUGGACacgcUGGACg- -3' miRNA: 3'- gUGGCG-----CC-GCGCUACUUGa---ACUUGag -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 135119 | 0.66 | 0.970996 |
Target: 5'- aGCgCGCGGgGCGGgcUGGGCggGGACg- -3' miRNA: 3'- gUG-GCGCCgCGCU--ACUUGaaCUUGag -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 100898 | 0.66 | 0.966027 |
Target: 5'- gCGCCGCGGCGCGcgcgcgcccgacgacGcGAGCgcGGGCg- -3' miRNA: 3'- -GUGGCGCCGCGC---------------UaCUUGaaCUUGag -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 90436 | 0.66 | 0.964696 |
Target: 5'- aCGCCcauCaGCGUGAUGcAGCgggUGGACUCg -3' miRNA: 3'- -GUGGc--GcCGCGCUAC-UUGa--ACUUGAG- -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 73040 | 0.67 | 0.95354 |
Target: 5'- gGCgGUGGCGCGGUGGGggUGcGCg- -3' miRNA: 3'- gUGgCGCCGCGCUACUUgaACuUGag -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 104721 | 0.67 | 0.95354 |
Target: 5'- gCugCGCGGCGCcGUGAccuaccuggagcGCUUcGACUUu -3' miRNA: 3'- -GugGCGCCGCGcUACU------------UGAAcUUGAG- -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 105526 | 0.67 | 0.95354 |
Target: 5'- gCAUgGCGGCGCGcAUcGGGCccGAGCUg -3' miRNA: 3'- -GUGgCGCCGCGC-UA-CUUGaaCUUGAg -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 6230 | 0.67 | 0.95354 |
Target: 5'- aGCCGCGGCGCcggGAGCccuGGCUg -3' miRNA: 3'- gUGGCGCCGCGcuaCUUGaacUUGAg -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 50477 | 0.67 | 0.95354 |
Target: 5'- cCAgCGCGGCGCGAccGAGCc-GGACc- -3' miRNA: 3'- -GUgGCGCCGCGCUa-CUUGaaCUUGag -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 99084 | 0.66 | 0.957493 |
Target: 5'- gCACCGUGGCGCGGcgccUGcGCacGGAC-Ca -3' miRNA: 3'- -GUGGCGCCGCGCU----ACuUGaaCUUGaG- -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 47638 | 0.66 | 0.957493 |
Target: 5'- gGCgGCGGCGCGcgGuACUgcAACUg -3' miRNA: 3'- gUGgCGCCGCGCuaCuUGAacUUGAg -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 122671 | 0.66 | 0.960849 |
Target: 5'- gCGCCGCGccgagguGCGCGcgGcGGCcgugGAGCUCg -3' miRNA: 3'- -GUGGCGC-------CGCGCuaC-UUGaa--CUUGAG- -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 100434 | 0.66 | 0.96121 |
Target: 5'- gCugCGCGGCGUGAUGGcgcagACgacgGAggcGCUg -3' miRNA: 3'- -GugGCGCCGCGCUACU-----UGaa--CU---UGAg -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 19423 | 0.66 | 0.96121 |
Target: 5'- cCACCGCuccggGGUGaCGAUGGGCg---GCUCg -3' miRNA: 3'- -GUGGCG-----CCGC-GCUACUUGaacuUGAG- -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 122217 | 0.66 | 0.96121 |
Target: 5'- aGCCGU-GCGCGGUGuGCUUcgagGAGCUg -3' miRNA: 3'- gUGGCGcCGCGCUACuUGAA----CUUGAg -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 82616 | 0.66 | 0.96121 |
Target: 5'- cCGCgCGCGGgcgcCGCGGUGGGCgcgGGACc- -3' miRNA: 3'- -GUG-GCGCC----GCGCUACUUGaa-CUUGag -5' |
|||||||
29401 | 5' | -53.1 | NC_006151.1 | + | 128830 | 0.66 | 0.964358 |
Target: 5'- --aCGCGGCGCucUGGgccuuguGCUUGAACg- -3' miRNA: 3'- gugGCGCCGCGcuACU-------UGAACUUGag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home