miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29402 5' -51.5 NC_006151.1 + 21566 0.67 0.972507
Target:  5'- cGGCGAGcccgccgAGGGCc-GCGCGGGGUCg -3'
miRNA:   3'- cUCGCUCa------UCUCGcuUGUGCUCUAGa -5'
29402 5' -51.5 NC_006151.1 + 65683 0.67 0.972507
Target:  5'- cGGCGAGguccccGucCGGGCGCGGGAUCa -3'
miRNA:   3'- cUCGCUCau----CucGCUUGUGCUCUAGa -5'
29402 5' -51.5 NC_006151.1 + 93430 0.67 0.966358
Target:  5'- aGAG-GAGgaggGGGGCGAGCG-GGGGUCg -3'
miRNA:   3'- -CUCgCUCa---UCUCGCUUGUgCUCUAGa -5'
29402 5' -51.5 NC_006151.1 + 42342 0.67 0.966358
Target:  5'- -cGgGAGUGGAGCGGAgGgGAGGg-- -3'
miRNA:   3'- cuCgCUCAUCUCGCUUgUgCUCUaga -5'
29402 5' -51.5 NC_006151.1 + 4972 0.67 0.966358
Target:  5'- uGAGCGAgaggugguuguuGUGGAGCGGcgcuuccuGCGCGGGggCc -3'
miRNA:   3'- -CUCGCU------------CAUCUCGCU--------UGUGCUCuaGa -5'
29402 5' -51.5 NC_006151.1 + 30168 0.68 0.962946
Target:  5'- -cGCGGG-AGGGCGggUGagaGAGGUCg -3'
miRNA:   3'- cuCGCUCaUCUCGCuuGUg--CUCUAGa -5'
29402 5' -51.5 NC_006151.1 + 12393 0.68 0.955413
Target:  5'- aGAGCGAG-AGcGgGAACugGAGAg-- -3'
miRNA:   3'- -CUCGCUCaUCuCgCUUGugCUCUaga -5'
29402 5' -51.5 NC_006151.1 + 12354 0.68 0.955413
Target:  5'- gGGGCGGGgAGcGCGAGCGgGAGAa-- -3'
miRNA:   3'- -CUCGCUCaUCuCGCUUGUgCUCUaga -5'
29402 5' -51.5 NC_006151.1 + 72774 0.68 0.955413
Target:  5'- cGGCGGGUacgccuccuggaAGAGCGcGCACG-GGUCc -3'
miRNA:   3'- cUCGCUCA------------UCUCGCuUGUGCuCUAGa -5'
29402 5' -51.5 NC_006151.1 + 113240 0.69 0.937387
Target:  5'- uGGaCGAGUAcuGGGCgGAGCACGAGggCUu -3'
miRNA:   3'- cUC-GCUCAU--CUCG-CUUGUGCUCuaGA- -5'
29402 5' -51.5 NC_006151.1 + 133406 0.69 0.932245
Target:  5'- cGAGCGGGcGGucuuggccGCGGACGCGGGgGUCUu -3'
miRNA:   3'- -CUCGCUCaUCu-------CGCUUGUGCUC-UAGA- -5'
29402 5' -51.5 NC_006151.1 + 11759 0.69 0.921188
Target:  5'- cGGGCGAGU-GAGCGuGCGCGAaGGg-- -3'
miRNA:   3'- -CUCGCUCAuCUCGCuUGUGCU-CUaga -5'
29402 5' -51.5 NC_006151.1 + 91076 0.7 0.915273
Target:  5'- aAGuCGAGgccgcGGGCGAGCGCGaAGGUCg -3'
miRNA:   3'- cUC-GCUCau---CUCGCUUGUGC-UCUAGa -5'
29402 5' -51.5 NC_006151.1 + 14474 0.7 0.909102
Target:  5'- uGGGCGGGUGG-GCGggUggGCGGGgGUCg -3'
miRNA:   3'- -CUCGCUCAUCuCGCuuG--UGCUC-UAGa -5'
29402 5' -51.5 NC_006151.1 + 60936 0.7 0.889072
Target:  5'- uGGGCGAGUAGAGCugccccagcguGGACAUGAccUCg -3'
miRNA:   3'- -CUCGCUCAUCUCG-----------CUUGUGCUcuAGa -5'
29402 5' -51.5 NC_006151.1 + 3541 0.71 0.86685
Target:  5'- gGAGCGGGguccGGAGCGGGCcCGAG-UCc -3'
miRNA:   3'- -CUCGCUCa---UCUCGCUUGuGCUCuAGa -5'
29402 5' -51.5 NC_006151.1 + 32131 0.72 0.842581
Target:  5'- gGGGgGAGagAGAGCGAgggGCGCGAGcgCUu -3'
miRNA:   3'- -CUCgCUCa-UCUCGCU---UGUGCUCuaGA- -5'
29402 5' -51.5 NC_006151.1 + 8002 0.75 0.645581
Target:  5'- cGGGCGGGcgGGAGgGGGCGCGAGAc-- -3'
miRNA:   3'- -CUCGCUCa-UCUCgCUUGUGCUCUaga -5'
29402 5' -51.5 NC_006151.1 + 34628 0.78 0.529904
Target:  5'- -cGCGGGUGGGGCGAcCGCGGGgGUCg -3'
miRNA:   3'- cuCGCUCAUCUCGCUuGUGCUC-UAGa -5'
29402 5' -51.5 NC_006151.1 + 133740 0.84 0.252379
Target:  5'- cGAGCGAGUGGGGuCGGGCGCGugcGGAUCg -3'
miRNA:   3'- -CUCGCUCAUCUC-GCUUGUGC---UCUAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.