miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29403 5' -53.7 NC_006151.1 + 103964 0.66 0.960966
Target:  5'- cGGCGCGccAGCGCGuCGGcga-GCUGGa -3'
miRNA:   3'- -CCGUGCacUUGUGC-GCCuagaCGACC- -5'
29403 5' -53.7 NC_006151.1 + 39346 0.66 0.957302
Target:  5'- cGGCGCGgcgcGGCGC-CGGcucAUCgUGCUGGa -3'
miRNA:   3'- -CCGUGCac--UUGUGcGCC---UAG-ACGACC- -5'
29403 5' -53.7 NC_006151.1 + 81110 0.66 0.957302
Target:  5'- gGGCAUGcGAuccguguagucGCACGCGGcgCUGUcguugcugacgaUGGc -3'
miRNA:   3'- -CCGUGCaCU-----------UGUGCGCCuaGACG------------ACC- -5'
29403 5' -53.7 NC_006151.1 + 112591 0.67 0.95341
Target:  5'- gGGCuuCGUGGAgGCcgccGCGGcgCcGCUGGc -3'
miRNA:   3'- -CCGu-GCACUUgUG----CGCCuaGaCGACC- -5'
29403 5' -53.7 NC_006151.1 + 21318 0.67 0.95341
Target:  5'- uGGCGCGaGAcgcccggcGCgGCGgGGGUCcgcgGCUGGa -3'
miRNA:   3'- -CCGUGCaCU--------UG-UGCgCCUAGa---CGACC- -5'
29403 5' -53.7 NC_006151.1 + 103471 0.67 0.95341
Target:  5'- gGGCACGgu-GCuCGCGGcgCUG-UGGc -3'
miRNA:   3'- -CCGUGCacuUGuGCGCCuaGACgACC- -5'
29403 5' -53.7 NC_006151.1 + 137773 0.67 0.949285
Target:  5'- cGCGCGUGcuccAGCAgGCcgugCUGCUGGa -3'
miRNA:   3'- cCGUGCAC----UUGUgCGccuaGACGACC- -5'
29403 5' -53.7 NC_006151.1 + 65172 0.67 0.944925
Target:  5'- cGGCGCGcGAGgcggaaGCGCGGGUCcGCg-- -3'
miRNA:   3'- -CCGUGCaCUUg-----UGCGCCUAGaCGacc -5'
29403 5' -53.7 NC_006151.1 + 129301 0.67 0.944925
Target:  5'- gGGCGCGgcgGAGCAUGgCGGAggcagagGCgGGu -3'
miRNA:   3'- -CCGUGCa--CUUGUGC-GCCUaga----CGaCC- -5'
29403 5' -53.7 NC_006151.1 + 51353 0.67 0.944925
Target:  5'- cGGCcaggacCGUGAGCAC-CGGccCgUGCUGGa -3'
miRNA:   3'- -CCGu-----GCACUUGUGcGCCuaG-ACGACC- -5'
29403 5' -53.7 NC_006151.1 + 48843 0.67 0.944925
Target:  5'- uGGCccccuCGUG-GCGCGCG---CUGCUGGa -3'
miRNA:   3'- -CCGu----GCACuUGUGCGCcuaGACGACC- -5'
29403 5' -53.7 NC_006151.1 + 34625 0.67 0.940326
Target:  5'- aGGCGCGggugGGGCgaccGCGgGGGUCgcgGgaGGg -3'
miRNA:   3'- -CCGUGCa---CUUG----UGCgCCUAGa--CgaCC- -5'
29403 5' -53.7 NC_006151.1 + 127476 0.67 0.940326
Target:  5'- cGGCGCGgaacGAGC-CGCGGAccccgCgccggaaGCUGGu -3'
miRNA:   3'- -CCGUGCa---CUUGuGCGCCUa----Ga------CGACC- -5'
29403 5' -53.7 NC_006151.1 + 104917 0.67 0.940326
Target:  5'- cGGCGCGcGAcCGCGaCGGGgcccUCgaGCUGGc -3'
miRNA:   3'- -CCGUGCaCUuGUGC-GCCU----AGa-CGACC- -5'
29403 5' -53.7 NC_006151.1 + 117439 0.67 0.935486
Target:  5'- cGUugG-GGAaGCGCGGGUCcgcGCUGGc -3'
miRNA:   3'- cCGugCaCUUgUGCGCCUAGa--CGACC- -5'
29403 5' -53.7 NC_006151.1 + 98958 0.67 0.935486
Target:  5'- gGGC-CGUGGACGagGCGGcgCUGgUGc -3'
miRNA:   3'- -CCGuGCACUUGUg-CGCCuaGACgACc -5'
29403 5' -53.7 NC_006151.1 + 28382 0.67 0.935486
Target:  5'- gGGCACGUgGGGCcCGUGGAgagaUUUGaUUGGg -3'
miRNA:   3'- -CCGUGCA-CUUGuGCGCCU----AGAC-GACC- -5'
29403 5' -53.7 NC_006151.1 + 14475 0.67 0.935486
Target:  5'- gGGCGgGUGGGCggguggGCGgGGGUCgGgaGGg -3'
miRNA:   3'- -CCGUgCACUUG------UGCgCCUAGaCgaCC- -5'
29403 5' -53.7 NC_006151.1 + 103776 0.68 0.925079
Target:  5'- uGCGCGagucgGAGCGCugGCGGcgCUGCaGGc -3'
miRNA:   3'- cCGUGCa----CUUGUG--CGCCuaGACGaCC- -5'
29403 5' -53.7 NC_006151.1 + 102325 0.68 0.925079
Target:  5'- uGGUGCugacGGAgGCGCGcGcgCUGCUGGa -3'
miRNA:   3'- -CCGUGca--CUUgUGCGC-CuaGACGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.