miRNA display CGI


Results 61 - 80 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29404 5' -54 NC_006151.1 + 89390 0.7 0.811034
Target:  5'- cGCGCGAGCGUgggCGUGAAu--CAGGa-- -3'
miRNA:   3'- -CGCGCUCGCA---GCACUUcguGUCCaac -5'
29404 5' -54 NC_006151.1 + 93745 0.73 0.653612
Target:  5'- aUGCGGGCcUCGUcGggGCGCGGGg-- -3'
miRNA:   3'- cGCGCUCGcAGCA-CuuCGUGUCCaac -5'
29404 5' -54 NC_006151.1 + 94756 0.67 0.925463
Target:  5'- cGCGCGgaaacaggcgccgcAGCGUCuccauGAGCGgCAGGUUGg -3'
miRNA:   3'- -CGCGC--------------UCGCAGcac--UUCGU-GUCCAAC- -5'
29404 5' -54 NC_006151.1 + 98931 0.67 0.921574
Target:  5'- uGCGCGAGCaguUCGccGAggcGGCGCGGGccgUGg -3'
miRNA:   3'- -CGCGCUCGc--AGCa-CU---UCGUGUCCa--AC- -5'
29404 5' -54 NC_006151.1 + 100223 0.72 0.684622
Target:  5'- cCGCGGGCGcCGUGGccgAGCGCGuGGUg- -3'
miRNA:   3'- cGCGCUCGCaGCACU---UCGUGU-CCAac -5'
29404 5' -54 NC_006151.1 + 106766 0.66 0.955056
Target:  5'- aGCGCGAcGCG-CGUGA-GCGCcuGGa-- -3'
miRNA:   3'- -CGCGCU-CGCaGCACUuCGUGu-CCaac -5'
29404 5' -54 NC_006151.1 + 115280 0.67 0.915811
Target:  5'- cGCGCGuacGCGUUGaUGAAGgCGCAG-UUGu -3'
miRNA:   3'- -CGCGCu--CGCAGC-ACUUC-GUGUCcAAC- -5'
29404 5' -54 NC_006151.1 + 115960 1.1 0.003514
Target:  5'- aGCGCGAGCGUCGUGAAGCACAGGUUGu -3'
miRNA:   3'- -CGCGCUCGCAGCACUUCGUGUCCAAC- -5'
29404 5' -54 NC_006151.1 + 117237 0.66 0.942167
Target:  5'- cGCGCGuccaCGUCGgcgggcccGAGGCGCGGGc-- -3'
miRNA:   3'- -CGCGCuc--GCAGCa-------CUUCGUGUCCaac -5'
29404 5' -54 NC_006151.1 + 117423 0.67 0.931847
Target:  5'- aGCGUGAccaccguGcCGUUGggGAAGCGCGGGUc- -3'
miRNA:   3'- -CGCGCU-------C-GCAGCa-CUUCGUGUCCAac -5'
29404 5' -54 NC_006151.1 + 119120 0.68 0.890324
Target:  5'- cGCGCGgccGGCcUCGUgGggGCGCuGGUg- -3'
miRNA:   3'- -CGCGC---UCGcAGCA-CuuCGUGuCCAac -5'
29404 5' -54 NC_006151.1 + 123271 0.69 0.84519
Target:  5'- cGCGCGGGCaccGUCGUGGacgAGCGCGagacGGg-- -3'
miRNA:   3'- -CGCGCUCG---CAGCACU---UCGUGU----CCaac -5'
29404 5' -54 NC_006151.1 + 127927 0.66 0.955056
Target:  5'- aGCGgGGGCGgCGaGAcgGGCACGGGc-- -3'
miRNA:   3'- -CGCgCUCGCaGCaCU--UCGUGUCCaac -5'
29404 5' -54 NC_006151.1 + 128224 0.67 0.921574
Target:  5'- uGCGaCGAGC-UCGUG-GGCGcCAGGUc- -3'
miRNA:   3'- -CGC-GCUCGcAGCACuUCGU-GUCCAac -5'
29404 5' -54 NC_006151.1 + 128277 0.67 0.921574
Target:  5'- cGCGCGcAGCGcCGc---GCGCAGGUa- -3'
miRNA:   3'- -CGCGC-UCGCaGCacuuCGUGUCCAac -5'
29404 5' -54 NC_006151.1 + 129501 0.66 0.950999
Target:  5'- aGCGCGGGCG-CGaUGAcgAGCcgcuugccgccgACGGGggGg -3'
miRNA:   3'- -CGCGCUCGCaGC-ACU--UCG------------UGUCCaaC- -5'
29404 5' -54 NC_006151.1 + 130020 0.7 0.811034
Target:  5'- cGCGCGccacGGcCGUCGUGAgccAGCGCAGcGcgUGg -3'
miRNA:   3'- -CGCGC----UC-GCAGCACU---UCGUGUC-Ca-AC- -5'
29404 5' -54 NC_006151.1 + 130088 0.74 0.616209
Target:  5'- gGCGCGAGCagcucgcgcuccucgGcCGUGAAGCcCGGGUUc -3'
miRNA:   3'- -CGCGCUCG---------------CaGCACUUCGuGUCCAAc -5'
29404 5' -54 NC_006151.1 + 130523 0.66 0.950159
Target:  5'- gGCGCGGGCGUCGcGuacacgcccccGCGCgAGGgcGg -3'
miRNA:   3'- -CGCGCUCGCAGCaCuu---------CGUG-UCCaaC- -5'
29404 5' -54 NC_006151.1 + 133486 0.7 0.783632
Target:  5'- cCGCGGGCGUCaccuUGGcGGCGCGGGggGc -3'
miRNA:   3'- cGCGCUCGCAGc---ACU-UCGUGUCCaaC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.