Results 41 - 60 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29404 | 5' | -54 | NC_006151.1 | + | 69326 | 0.66 | 0.958879 |
Target: 5'- uGCGCGGGCG-CGUcGccgcccgcGAGCGCGGcGUa- -3' miRNA: 3'- -CGCGCUCGCaGCA-C--------UUCGUGUC-CAac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 65175 | 0.73 | 0.663978 |
Target: 5'- cGCGCGAG-G-CG-GAAGCGCGGGUc- -3' miRNA: 3'- -CGCGCUCgCaGCaCUUCGUGUCCAac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 64351 | 0.68 | 0.903549 |
Target: 5'- aGCGCGGGcCGUCGgccccccAGCGCAcGGUc- -3' miRNA: 3'- -CGCGCUC-GCAGCacu----UCGUGU-CCAac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 62064 | 0.66 | 0.953864 |
Target: 5'- cGCGCGcGcCGUCGUGAcgaacgucguccucGGCGC-GGUc- -3' miRNA: 3'- -CGCGCuC-GCAGCACU--------------UCGUGuCCAac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 59521 | 0.68 | 0.876162 |
Target: 5'- cGCGCGcAGCGccgCGUGAGggcccagcGCGCGGGc-- -3' miRNA: 3'- -CGCGC-UCGCa--GCACUU--------CGUGUCCaac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 59179 | 0.66 | 0.942167 |
Target: 5'- aGCGCG-GCGaucUCGgccuuGCGCAGGUUc -3' miRNA: 3'- -CGCGCuCGC---AGCacuu-CGUGUCCAAc -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 58353 | 0.69 | 0.868742 |
Target: 5'- cGCGCGAagcugguccgccGCGUCGUGAucucgacggagAGCGCGGc--- -3' miRNA: 3'- -CGCGCU------------CGCAGCACU-----------UCGUGUCcaac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 57747 | 0.67 | 0.915811 |
Target: 5'- gGCGCGccgcAGCcgcUCGUGGcccgGGCACAGGg-- -3' miRNA: 3'- -CGCGC----UCGc--AGCACU----UCGUGUCCaac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 55376 | 0.66 | 0.955056 |
Target: 5'- uGCGCGAGCG-CGagcagGAGGUGCGGc--- -3' miRNA: 3'- -CGCGCUCGCaGCa----CUUCGUGUCcaac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 54825 | 0.66 | 0.958879 |
Target: 5'- cGCGCGAcGCGcucaCGggcGAGCGCGGGg-- -3' miRNA: 3'- -CGCGCU-CGCa---GCac-UUCGUGUCCaac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 54648 | 0.7 | 0.82848 |
Target: 5'- gGCGCGAGCGcugCGUGGacgAGCACGa---- -3' miRNA: 3'- -CGCGCUCGCa--GCACU---UCGUGUccaac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 53658 | 0.69 | 0.84519 |
Target: 5'- -gGCGGGC-UCGUGggGCACGcGUa- -3' miRNA: 3'- cgCGCUCGcAGCACuuCGUGUcCAac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 53353 | 0.68 | 0.890324 |
Target: 5'- cGCGCGccgcguacuGCGUCGUGucGUacGCGGcGUUGa -3' miRNA: 3'- -CGCGCu--------CGCAGCACuuCG--UGUC-CAAC- -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 53191 | 0.68 | 0.903549 |
Target: 5'- uGCGCGAGagGUcCGUGuacucgcgcAGCGCGcGGUUGg -3' miRNA: 3'- -CGCGCUCg-CA-GCACu--------UCGUGU-CCAAC- -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 52600 | 0.69 | 0.861102 |
Target: 5'- uGCGCGuggacgaaGGCGUCGUc--GCGCAGGa-- -3' miRNA: 3'- -CGCGC--------UCGCAGCAcuuCGUGUCCaac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 51762 | 0.68 | 0.890324 |
Target: 5'- uGCGCagguuGGCGcgCGUGAAGCACAcGGc-- -3' miRNA: 3'- -CGCGc----UCGCa-GCACUUCGUGU-CCaac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 51239 | 0.69 | 0.868742 |
Target: 5'- gGCGCGAGCGcUCGgcgcAGCucCAGGUc- -3' miRNA: 3'- -CGCGCUCGC-AGCacu-UCGu-GUCCAac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 51131 | 0.69 | 0.861102 |
Target: 5'- cGCGCaGGGCGUCccGGAGCACGucGGg-- -3' miRNA: 3'- -CGCG-CUCGCAGcaCUUCGUGU--CCaac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 45090 | 0.67 | 0.932363 |
Target: 5'- cGCGCGguguGGCGUCGaUGggGUcgugccgugggACGGGa-- -3' miRNA: 3'- -CGCGC----UCGCAGC-ACuuCG-----------UGUCCaac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 44843 | 0.67 | 0.909801 |
Target: 5'- gGgGCGAGCGgggUCGUGGAGgGgGGGc-- -3' miRNA: 3'- -CgCGCUCGC---AGCACUUCgUgUCCaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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