miRNA display CGI


Results 41 - 60 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29404 5' -54 NC_006151.1 + 5243 0.66 0.958879
Target:  5'- cGCGCG-GCGgCGgcgGggGCcCGGGggGc -3'
miRNA:   3'- -CGCGCuCGCaGCa--CuuCGuGUCCaaC- -5'
29404 5' -54 NC_006151.1 + 14979 0.66 0.958879
Target:  5'- aGCGCGGGCGcuacgUCGUcGAgcaccccgAGUACGGGc-- -3'
miRNA:   3'- -CGCGCUCGC-----AGCA-CU--------UCGUGUCCaac -5'
29404 5' -54 NC_006151.1 + 69326 0.66 0.958879
Target:  5'- uGCGCGGGCG-CGUcGccgcccgcGAGCGCGGcGUa- -3'
miRNA:   3'- -CGCGCUCGCaGCA-C--------UUCGUGUC-CAac -5'
29404 5' -54 NC_006151.1 + 42327 0.66 0.958879
Target:  5'- cGCGCGAagcuGCGacgggaGUGGAGCGgAGGg-- -3'
miRNA:   3'- -CGCGCU----CGCag----CACUUCGUgUCCaac -5'
29404 5' -54 NC_006151.1 + 54825 0.66 0.958879
Target:  5'- cGCGCGAcGCGcucaCGggcGAGCGCGGGg-- -3'
miRNA:   3'- -CGCGCU-CGCa---GCac-UUCGUGUCCaac -5'
29404 5' -54 NC_006151.1 + 75393 0.66 0.946704
Target:  5'- gGCGCgGGGCGg-GUGcguGCGCGGGUc- -3'
miRNA:   3'- -CGCG-CUCGCagCACuu-CGUGUCCAac -5'
29404 5' -54 NC_006151.1 + 117237 0.66 0.942167
Target:  5'- cGCGCGuccaCGUCGgcgggcccGAGGCGCGGGc-- -3'
miRNA:   3'- -CGCGCuc--GCAGCa-------CUUCGUGUCCaac -5'
29404 5' -54 NC_006151.1 + 27307 0.67 0.921574
Target:  5'- gGCGUGGGgGUCGaggcGggGgACGGGggGc -3'
miRNA:   3'- -CGCGCUCgCAGCa---CuuCgUGUCCaaC- -5'
29404 5' -54 NC_006151.1 + 128224 0.67 0.921574
Target:  5'- uGCGaCGAGC-UCGUG-GGCGcCAGGUc- -3'
miRNA:   3'- -CGC-GCUCGcAGCACuUCGU-GUCCAac -5'
29404 5' -54 NC_006151.1 + 98931 0.67 0.921574
Target:  5'- uGCGCGAGCaguUCGccGAggcGGCGCGGGccgUGg -3'
miRNA:   3'- -CGCGCUCGc--AGCa-CU---UCGUGUCCa--AC- -5'
29404 5' -54 NC_006151.1 + 20207 0.67 0.921574
Target:  5'- cGCGCGcAGCGcCGgGccGCGCAGGc-- -3'
miRNA:   3'- -CGCGC-UCGCaGCaCuuCGUGUCCaac -5'
29404 5' -54 NC_006151.1 + 128277 0.67 0.921574
Target:  5'- cGCGCGcAGCGcCGc---GCGCAGGUa- -3'
miRNA:   3'- -CGCGC-UCGCaGCacuuCGUGUCCAac -5'
29404 5' -54 NC_006151.1 + 94756 0.67 0.925463
Target:  5'- cGCGCGgaaacaggcgccgcAGCGUCuccauGAGCGgCAGGUUGg -3'
miRNA:   3'- -CGCGC--------------UCGCAGcac--UUCGU-GUCCAAC- -5'
29404 5' -54 NC_006151.1 + 81849 0.67 0.927092
Target:  5'- gGCGCGAgagcaggcgcGCGUCGcucucGAcGCGCAGGa-- -3'
miRNA:   3'- -CGCGCU----------CGCAGCa----CUuCGUGUCCaac -5'
29404 5' -54 NC_006151.1 + 117423 0.67 0.931847
Target:  5'- aGCGUGAccaccguGcCGUUGggGAAGCGCGGGUc- -3'
miRNA:   3'- -CGCGCU-------C-GCAGCa-CUUCGUGUCCAac -5'
29404 5' -54 NC_006151.1 + 45090 0.67 0.932363
Target:  5'- cGCGCGguguGGCGUCGaUGggGUcgugccgugggACGGGa-- -3'
miRNA:   3'- -CGCGC----UCGCAGC-ACuuCG-----------UGUCCaac -5'
29404 5' -54 NC_006151.1 + 24463 0.67 0.937388
Target:  5'- cGCGCGAGCaccUCG-GggGCGuuGGUc- -3'
miRNA:   3'- -CGCGCUCGc--AGCaCuuCGUguCCAac -5'
29404 5' -54 NC_006151.1 + 30611 0.66 0.942167
Target:  5'- aCGCGGGCGgucggCGUGcgcgcuGUGCGGGUg- -3'
miRNA:   3'- cGCGCUCGCa----GCACuu----CGUGUCCAac -5'
29404 5' -54 NC_006151.1 + 59179 0.66 0.942167
Target:  5'- aGCGCG-GCGaucUCGgccuuGCGCAGGUUc -3'
miRNA:   3'- -CGCGCuCGC---AGCacuu-CGUGUCCAAc -5'
29404 5' -54 NC_006151.1 + 82722 0.66 0.942167
Target:  5'- cCGCGAGgGUCaG-GAGGCGCAGcGg-- -3'
miRNA:   3'- cGCGCUCgCAG-CaCUUCGUGUC-Caac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.