miRNA display CGI


Results 61 - 80 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29405 3' -60.8 NC_006151.1 + 89570 0.68 0.523371
Target:  5'- aGGCUgAUGGGCacgCCCaUGGGCUCGCcgGCg -3'
miRNA:   3'- gCCGG-UACUCGa--GGG-GCUCGAGCG--UG- -5'
29405 3' -60.8 NC_006151.1 + 8314 0.68 0.542728
Target:  5'- -cGCCccGAGC-CCCCGGGg-CGCGCg -3'
miRNA:   3'- gcCGGuaCUCGaGGGGCUCgaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 106880 0.68 0.546629
Target:  5'- uGGCCGUGAcGCUgugcgaccugcgcgaCCCCGcGCU-GCACc -3'
miRNA:   3'- gCCGGUACU-CGA---------------GGGGCuCGAgCGUG- -5'
29405 3' -60.8 NC_006151.1 + 39476 0.68 0.552496
Target:  5'- uGGCCcgG-GUgCCgCGAGCUcCGCGCg -3'
miRNA:   3'- gCCGGuaCuCGaGGgGCUCGA-GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 38536 0.68 0.572182
Target:  5'- cCGGCCcgGAcccaGCg-CCCGAGCggCGCAa -3'
miRNA:   3'- -GCCGGuaCU----CGagGGGCUCGa-GCGUg -5'
29405 3' -60.8 NC_006151.1 + 94674 0.68 0.572182
Target:  5'- cCGGCgGgcAGCUCCCCGAagGC-CGCGg -3'
miRNA:   3'- -GCCGgUacUCGAGGGGCU--CGaGCGUg -5'
29405 3' -60.8 NC_006151.1 + 13407 0.68 0.572182
Target:  5'- cCGGCCAauggggGAGCcgggcccgcgUCCCCGGGgCcCGCAUu -3'
miRNA:   3'- -GCCGGUa-----CUCG----------AGGGGCUC-GaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 105154 0.68 0.572182
Target:  5'- aCGGCCGcGGGC-CCauggaCGAGUUCGC-Cg -3'
miRNA:   3'- -GCCGGUaCUCGaGGg----GCUCGAGCGuG- -5'
29405 3' -60.8 NC_006151.1 + 98342 0.68 0.572182
Target:  5'- gGGCCGcGAGacgCCCgCGGGCgUGCGCg -3'
miRNA:   3'- gCCGGUaCUCga-GGG-GCUCGaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 46121 0.68 0.572182
Target:  5'- aGGCCGaagggcaGGGCUCCggguCUGGGuCUCGCGCc -3'
miRNA:   3'- gCCGGUa------CUCGAGG----GGCUC-GAGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 103831 0.68 0.562316
Target:  5'- gCGGCCGUgGAGaUgCUCGGGCggcugCGCGCg -3'
miRNA:   3'- -GCCGGUA-CUCgAgGGGCUCGa----GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 81516 0.68 0.562316
Target:  5'- gCGGCCcgcGUGAGCUCggcggCCGcGGCggCGCGCu -3'
miRNA:   3'- -GCCGG---UACUCGAGg----GGC-UCGa-GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 56222 0.68 0.562316
Target:  5'- uGGCCcUGGuGCgCCCCGAggacccgacggaGUUCGCGCu -3'
miRNA:   3'- gCCGGuACU-CGaGGGGCU------------CGAGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 6016 0.68 0.562316
Target:  5'- gCGGCCG-GGGa--CCCGGGCUCGUc- -3'
miRNA:   3'- -GCCGGUaCUCgagGGGCUCGAGCGug -5'
29405 3' -60.8 NC_006151.1 + 134970 0.68 0.552496
Target:  5'- uCGGCCAgccuccGGGcCUUCUCGGGCggGCGCg -3'
miRNA:   3'- -GCCGGUa-----CUC-GAGGGGCUCGagCGUG- -5'
29405 3' -60.8 NC_006151.1 + 4545 0.69 0.504285
Target:  5'- gCGGCCAUG-GCgUCCCCGAuguGCg-GCAg -3'
miRNA:   3'- -GCCGGUACuCG-AGGGGCU---CGagCGUg -5'
29405 3' -60.8 NC_006151.1 + 104549 0.69 0.504285
Target:  5'- aGGCC--GAGCUggccgCCCUGGGCgcgcggCGCGCg -3'
miRNA:   3'- gCCGGuaCUCGA-----GGGGCUCGa-----GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 45429 0.69 0.504285
Target:  5'- gGGCCG-GGGgUUCgCGGGCgUCGCACg -3'
miRNA:   3'- gCCGGUaCUCgAGGgGCUCG-AGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 123373 0.69 0.504285
Target:  5'- cCGGCCGUcacgcgcaAGUUCUUCGAGCUCGUcaACg -3'
miRNA:   3'- -GCCGGUAc-------UCGAGGGGCUCGAGCG--UG- -5'
29405 3' -60.8 NC_006151.1 + 3131 0.69 0.494855
Target:  5'- aGGCCGggcgcgGGGCgCCCucggCGGGCUCgGCGCa -3'
miRNA:   3'- gCCGGUa-----CUCGaGGG----GCUCGAG-CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.