miRNA display CGI


Results 21 - 40 of 440 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29406 3' -65.1 NC_006151.1 + 68410 0.66 0.533054
Target:  5'- gCGCGCGcccgccccccucGCCCCgcuacacgcGGCGgcacagGCGCUCGaGCa -3'
miRNA:   3'- -GCGUGC------------CGGGG---------CCGCag----CGCGAGC-CG- -5'
29406 3' -65.1 NC_006151.1 + 64516 0.66 0.532129
Target:  5'- gCGCGCcgccaaaGGCCgCCGcggccGCGUCGgGggCGGCg -3'
miRNA:   3'- -GCGUG-------CCGG-GGC-----CGCAGCgCgaGCCG- -5'
29406 3' -65.1 NC_006151.1 + 73257 0.66 0.523832
Target:  5'- gGCACGGgCgccaggcgguugCCGGCGUUGacCGUgCGGCg -3'
miRNA:   3'- gCGUGCCgG------------GGCCGCAGC--GCGaGCCG- -5'
29406 3' -65.1 NC_006151.1 + 90202 0.66 0.523832
Target:  5'- gCGCagACGGCCcacagcaggacgCCGGCcgagaUCGCGUcgCGGCu -3'
miRNA:   3'- -GCG--UGCCGG------------GGCCGc----AGCGCGa-GCCG- -5'
29406 3' -65.1 NC_006151.1 + 103660 0.66 0.523832
Target:  5'- gGaCACGGCggagaaGGCGgCGCGCgCGGCg -3'
miRNA:   3'- gC-GUGCCGggg---CCGCaGCGCGaGCCG- -5'
29406 3' -65.1 NC_006151.1 + 103890 0.66 0.523832
Target:  5'- gGCGCGccaCCUGGCGcuggagguggCGCGCgCGGCc -3'
miRNA:   3'- gCGUGCcg-GGGCCGCa---------GCGCGaGCCG- -5'
29406 3' -65.1 NC_006151.1 + 68745 0.66 0.523832
Target:  5'- cCGCucucgaaGGUCacguagCCGGCGguggCGCGCgCGGCg -3'
miRNA:   3'- -GCGug-----CCGG------GGCCGCa---GCGCGaGCCG- -5'
29406 3' -65.1 NC_006151.1 + 50685 0.66 0.523832
Target:  5'- cCGCGCcGCCgCGGCagcGUCcaCGCcUCGGCg -3'
miRNA:   3'- -GCGUGcCGGgGCCG---CAGc-GCG-AGCCG- -5'
29406 3' -65.1 NC_006151.1 + 54690 0.66 0.523832
Target:  5'- uGCGCGuCgCCGGCaG-CGUGCUgGGCc -3'
miRNA:   3'- gCGUGCcGgGGCCG-CaGCGCGAgCCG- -5'
29406 3' -65.1 NC_006151.1 + 128898 0.66 0.523832
Target:  5'- aGCaugACGGUgggGGCGUCGCGCUCGuCg -3'
miRNA:   3'- gCG---UGCCGgggCCGCAGCGCGAGCcG- -5'
29406 3' -65.1 NC_006151.1 + 98007 0.66 0.523832
Target:  5'- cCGCguagGCGGCgCCGGCcagGUC-CGCggggUGGCg -3'
miRNA:   3'- -GCG----UGCCGgGGCCG---CAGcGCGa---GCCG- -5'
29406 3' -65.1 NC_006151.1 + 133163 0.66 0.522914
Target:  5'- gGCGCgggcgugGGCCUCGGCcaCGCGUcccaCGGCc -3'
miRNA:   3'- gCGUG-------CCGGGGCCGcaGCGCGa---GCCG- -5'
29406 3' -65.1 NC_006151.1 + 22289 0.66 0.522914
Target:  5'- gGCGCGGgCaCGGCGUccacgucCGCGC-CGaGCg -3'
miRNA:   3'- gCGUGCCgGgGCCGCA-------GCGCGaGC-CG- -5'
29406 3' -65.1 NC_006151.1 + 18885 0.66 0.514673
Target:  5'- aCGUACaGCCCCGacuCGUC-CGCggUGGCg -3'
miRNA:   3'- -GCGUGcCGGGGCc--GCAGcGCGa-GCCG- -5'
29406 3' -65.1 NC_006151.1 + 77874 0.66 0.514673
Target:  5'- --gACGGCaucCCCGGCGUgCGCcccccGCUCaGCg -3'
miRNA:   3'- gcgUGCCG---GGGCCGCA-GCG-----CGAGcCG- -5'
29406 3' -65.1 NC_006151.1 + 59373 0.66 0.514673
Target:  5'- cCGCGCGGCCgU--CGUCGCGUccagcacgUGGCa -3'
miRNA:   3'- -GCGUGCCGGgGccGCAGCGCGa-------GCCG- -5'
29406 3' -65.1 NC_006151.1 + 84572 0.66 0.514673
Target:  5'- aGCGagGGCCUCGacGCGcgccUCGCGCU-GGCg -3'
miRNA:   3'- gCGUg-CCGGGGC--CGC----AGCGCGAgCCG- -5'
29406 3' -65.1 NC_006151.1 + 113027 0.66 0.514673
Target:  5'- aCGaCGCGuGCgCCgGGUGcUGCGCggCGGCg -3'
miRNA:   3'- -GC-GUGC-CG-GGgCCGCaGCGCGa-GCCG- -5'
29406 3' -65.1 NC_006151.1 + 123114 0.66 0.514673
Target:  5'- gCGCucgGCGGCgagCCUGGCGcagugcgUGCGCgagcagCGGCg -3'
miRNA:   3'- -GCG---UGCCG---GGGCCGCa------GCGCGa-----GCCG- -5'
29406 3' -65.1 NC_006151.1 + 130494 0.66 0.514673
Target:  5'- gCGCGCGGCgccacacgCCGcGCGUCucggGCGCg-GGCg -3'
miRNA:   3'- -GCGUGCCGg-------GGC-CGCAG----CGCGagCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.