miRNA display CGI


Results 21 - 40 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29406 5' -53.5 NC_006151.1 + 54354 0.66 0.968589
Target:  5'- cGGCGCGcuacGAgGACGUggcccGGGACugGa -3'
miRNA:   3'- cCCGCGCua--CUaCUGCA-----UCCUGugCg -5'
29406 5' -53.5 NC_006151.1 + 122472 0.66 0.968284
Target:  5'- cGGGCGcCGAggccGggGACGcGGGcgagacgGCGCGCn -3'
miRNA:   3'- -CCCGC-GCUa---CuaCUGCaUCC-------UGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 61136 0.66 0.965438
Target:  5'- aGGGUGCgGGUGAaGcuGCGUcggcaggacAGGACcaGCGCg -3'
miRNA:   3'- -CCCGCG-CUACUaC--UGCA---------UCCUG--UGCG- -5'
29406 5' -53.5 NC_006151.1 + 60843 0.66 0.965438
Target:  5'- -uGCGCGuUGAucgUGGCGUccaugacgAGGACcCGCg -3'
miRNA:   3'- ccCGCGCuACU---ACUGCA--------UCCUGuGCG- -5'
29406 5' -53.5 NC_006151.1 + 52383 0.66 0.965438
Target:  5'- gGGGCcCGcgGG-GGCGgcGGGCGcCGCc -3'
miRNA:   3'- -CCCGcGCuaCUaCUGCauCCUGU-GCG- -5'
29406 5' -53.5 NC_006151.1 + 33302 0.66 0.965438
Target:  5'- gGGGCGCGcgc---GCGUGGGAC-CGg -3'
miRNA:   3'- -CCCGCGCuacuacUGCAUCCUGuGCg -5'
29406 5' -53.5 NC_006151.1 + 56139 0.66 0.965438
Target:  5'- cGGGUucgccuucGCGGUGGUcACGgccgccgAGGAC-CGCg -3'
miRNA:   3'- -CCCG--------CGCUACUAcUGCa------UCCUGuGCG- -5'
29406 5' -53.5 NC_006151.1 + 76821 0.66 0.965438
Target:  5'- cGGGCGCGua-GUGGCGgcccgcguccGGGCgACGUa -3'
miRNA:   3'- -CCCGCGCuacUACUGCau--------CCUG-UGCG- -5'
29406 5' -53.5 NC_006151.1 + 97294 0.66 0.965438
Target:  5'- cGGGCGUGuUGAgccGGCccGUcGGGCAgCGCg -3'
miRNA:   3'- -CCCGCGCuACUa--CUG--CAuCCUGU-GCG- -5'
29406 5' -53.5 NC_006151.1 + 129300 0.66 0.965438
Target:  5'- cGGGCGCGGcgGAgcaUGGCGgAGGcAgAgGCg -3'
miRNA:   3'- -CCCGCGCUa-CU---ACUGCaUCC-UgUgCG- -5'
29406 5' -53.5 NC_006151.1 + 102621 0.66 0.965438
Target:  5'- cGGGCGCGc----GACGUGa-GCGCGCu -3'
miRNA:   3'- -CCCGCGCuacuaCUGCAUccUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 105689 0.66 0.965438
Target:  5'- cGGCGCGggGccGACGccggcgcGGcCGCGCg -3'
miRNA:   3'- cCCGCGCuaCuaCUGCau-----CCuGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 114377 0.66 0.965111
Target:  5'- aGGGCGCGcucAUGAUGuACGUGGuguuccccgagaaGucgguGCACGUg -3'
miRNA:   3'- -CCCGCGC---UACUAC-UGCAUC-------------C-----UGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 7163 0.66 0.962071
Target:  5'- cGGGCGCGA----GGCGcaugcucGGCACGCg -3'
miRNA:   3'- -CCCGCGCUacuaCUGCauc----CUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 75194 0.66 0.962071
Target:  5'- -aGCGCuGcAUGAgcccgacgagGGCGUcGGGGCGCGCg -3'
miRNA:   3'- ccCGCG-C-UACUa---------CUGCA-UCCUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 93817 0.66 0.962071
Target:  5'- uGGCcucgucGCGGcUGAUGAaguCGUuGGACugGCa -3'
miRNA:   3'- cCCG------CGCU-ACUACU---GCAuCCUGugCG- -5'
29406 5' -53.5 NC_006151.1 + 142237 0.66 0.962071
Target:  5'- cGGGuCGCGAcGA-GGCGUcGGuCAuCGCg -3'
miRNA:   3'- -CCC-GCGCUaCUaCUGCAuCCuGU-GCG- -5'
29406 5' -53.5 NC_006151.1 + 98656 0.66 0.962071
Target:  5'- cGGGCGCGcgcuccgccGAcGACGUccuGGcCGCGCc -3'
miRNA:   3'- -CCCGCGCua-------CUaCUGCAu--CCuGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 137054 0.66 0.962071
Target:  5'- cGGCGcCGGUGuaccGCGUGGaGCugGCg -3'
miRNA:   3'- cCCGC-GCUACuac-UGCAUCcUGugCG- -5'
29406 5' -53.5 NC_006151.1 + 118549 0.66 0.961722
Target:  5'- gGGGCGCGGgcacGGUGuccaucaacgggcACGaGGcGugGCGCg -3'
miRNA:   3'- -CCCGCGCUa---CUAC-------------UGCaUC-CugUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.