miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29407 3' -45.4 NC_006151.1 + 113040 0.66 0.999978
Target:  5'- -cGGGUgcUGCGCGGCGgcggagcgcGAGGACg -3'
miRNA:   3'- uuUCUAacAUGCGUCGCaaa------CUUCUG- -5'
29407 3' -45.4 NC_006151.1 + 95426 0.66 0.999978
Target:  5'- cAGAGGUUGgACGUGGCGag-GgcGGCg -3'
miRNA:   3'- -UUUCUAACaUGCGUCGCaaaCuuCUG- -5'
29407 3' -45.4 NC_006151.1 + 2477 0.66 0.999944
Target:  5'- --cGGUUGgccGCGCGGUGcccGAAGGCg -3'
miRNA:   3'- uuuCUAACa--UGCGUCGCaaaCUUCUG- -5'
29407 3' -45.4 NC_006151.1 + 130880 0.66 0.999924
Target:  5'- ------aGUGgGCGGCGgcggUGGAGGCg -3'
miRNA:   3'- uuucuaaCAUgCGUCGCaa--ACUUCUG- -5'
29407 3' -45.4 NC_006151.1 + 76527 0.67 0.999899
Target:  5'- uAGAGGUUGUuguCGUccgagcggaAGCGcUUGAAGAUg -3'
miRNA:   3'- -UUUCUAACAu--GCG---------UCGCaAACUUCUG- -5'
29407 3' -45.4 NC_006151.1 + 55818 0.67 0.999826
Target:  5'- gGAGGAccUGUgcgGCGUGGUGUUUaaGAAGACg -3'
miRNA:   3'- -UUUCUa-ACA---UGCGUCGCAAA--CUUCUG- -5'
29407 3' -45.4 NC_006151.1 + 10459 0.68 0.999402
Target:  5'- gGAGGAgg--ACGCGGCGgcggUGAAGGa -3'
miRNA:   3'- -UUUCUaacaUGCGUCGCaa--ACUUCUg -5'
29407 3' -45.4 NC_006151.1 + 93864 0.7 0.997836
Target:  5'- aAGAGGUUGUGCGU-GCGgagguacgagaUGGAGGCg -3'
miRNA:   3'- -UUUCUAACAUGCGuCGCaa---------ACUUCUG- -5'
29407 3' -45.4 NC_006151.1 + 29202 0.7 0.997489
Target:  5'- aAAAGGg---GCGCGGCGgggUGggGAUg -3'
miRNA:   3'- -UUUCUaacaUGCGUCGCaa-ACuuCUG- -5'
29407 3' -45.4 NC_006151.1 + 110667 0.7 0.996991
Target:  5'- gGGGGAUUGgggcccaaagACGCGGCGguggGGAGAUc -3'
miRNA:   3'- -UUUCUAACa---------UGCGUCGCaaa-CUUCUG- -5'
29407 3' -45.4 NC_006151.1 + 94195 0.7 0.995748
Target:  5'- cGAGGUcGUcCGCGGCGgagagGAAGGCg -3'
miRNA:   3'- uUUCUAaCAuGCGUCGCaaa--CUUCUG- -5'
29407 3' -45.4 NC_006151.1 + 131011 0.76 0.914383
Target:  5'- uAGAGcgUGccgGCGUAGCGggUGAAGGCc -3'
miRNA:   3'- -UUUCuaACa--UGCGUCGCaaACUUCUG- -5'
29407 3' -45.4 NC_006151.1 + 114628 1.09 0.026594
Target:  5'- aAAAGAUUGUACGCAGCGUUUGAAGACu -3'
miRNA:   3'- -UUUCUAACAUGCGUCGCAAACUUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.