miRNA display CGI


Results 21 - 40 of 238 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29407 5' -62.3 NC_006151.1 + 92427 0.66 0.609734
Target:  5'- gCGCCCGUGuucccGCuggugcugcgcuGCCGCGAcGuCCUCg -3'
miRNA:   3'- aGCGGGCACu----CG------------CGGCGCUuCcGGAG- -5'
29407 5' -62.3 NC_006151.1 + 99979 0.66 0.609734
Target:  5'- gCGCUCGUGgcGGCGCuggCGCGcGAGGaCCUg -3'
miRNA:   3'- aGCGGGCAC--UCGCG---GCGC-UUCC-GGAg -5'
29407 5' -62.3 NC_006151.1 + 130719 0.66 0.609734
Target:  5'- -gGCCCGgGGGC-CCGCGc-GGCCg- -3'
miRNA:   3'- agCGGGCaCUCGcGGCGCuuCCGGag -5'
29407 5' -62.3 NC_006151.1 + 138707 0.66 0.609734
Target:  5'- -aGCCCGgcgcUGcGCGCCGCGcgcGGGUCg- -3'
miRNA:   3'- agCGGGC----ACuCGCGGCGCu--UCCGGag -5'
29407 5' -62.3 NC_006151.1 + 7264 0.66 0.609734
Target:  5'- cUCGCCCcacGUGGcCGCCcuCGGccaaugGGGCCUCa -3'
miRNA:   3'- -AGCGGG---CACUcGCGGc-GCU------UCCGGAG- -5'
29407 5' -62.3 NC_006151.1 + 17720 0.66 0.609734
Target:  5'- gCGCCCGgGuGCGCCG---GGGCC-Ca -3'
miRNA:   3'- aGCGGGCaCuCGCGGCgcuUCCGGaG- -5'
29407 5' -62.3 NC_006151.1 + 96641 0.66 0.609734
Target:  5'- gCGCCUc-GAGCucgGCgGCGAGGGCC-Cg -3'
miRNA:   3'- aGCGGGcaCUCG---CGgCGCUUCCGGaG- -5'
29407 5' -62.3 NC_006151.1 + 111824 0.66 0.609734
Target:  5'- cUGCCCGUGGaccuggaagacGCaCCGCGucggGGGGCgCUCg -3'
miRNA:   3'- aGCGGGCACU-----------CGcGGCGC----UUCCG-GAG- -5'
29407 5' -62.3 NC_006151.1 + 100219 0.66 0.605791
Target:  5'- aCGgCCGcGGGCGCCGUGGccgagcgcgugguGGCgCUCg -3'
miRNA:   3'- aGCgGGCaCUCGCGGCGCUu------------CCG-GAG- -5'
29407 5' -62.3 NC_006151.1 + 23243 0.66 0.599883
Target:  5'- cUCGCCCucGGGgGCCuCGggGGCaUCg -3'
miRNA:   3'- -AGCGGGcaCUCgCGGcGCuuCCGgAG- -5'
29407 5' -62.3 NC_006151.1 + 19693 0.66 0.599883
Target:  5'- -gGCCgG-GGGUGCCucccucagggagGCGAGGGCCg- -3'
miRNA:   3'- agCGGgCaCUCGCGG------------CGCUUCCGGag -5'
29407 5' -62.3 NC_006151.1 + 104561 0.66 0.599883
Target:  5'- cCGCCC-UGGGCGCgcggcgCGCGGacgugcugcAGGCCg- -3'
miRNA:   3'- aGCGGGcACUCGCG------GCGCU---------UCCGGag -5'
29407 5' -62.3 NC_006151.1 + 2102 0.66 0.590055
Target:  5'- -gGCCCGaGcGgGCCGCG-GGGCCg- -3'
miRNA:   3'- agCGGGCaCuCgCGGCGCuUCCGGag -5'
29407 5' -62.3 NC_006151.1 + 5724 0.66 0.590055
Target:  5'- gUGCUgGUG-GCGCCGgGGuccgAGGCCg- -3'
miRNA:   3'- aGCGGgCACuCGCGGCgCU----UCCGGag -5'
29407 5' -62.3 NC_006151.1 + 37752 0.66 0.590055
Target:  5'- -gGCCCugccgcacgcgGUGAGCGCCGU---GGCCa- -3'
miRNA:   3'- agCGGG-----------CACUCGCGGCGcuuCCGGag -5'
29407 5' -62.3 NC_006151.1 + 102577 0.66 0.590055
Target:  5'- gCGCCCGcgcgcgcGAGUcCCGCGAgucgcagcGGGCgCUCg -3'
miRNA:   3'- aGCGGGCa------CUCGcGGCGCU--------UCCG-GAG- -5'
29407 5' -62.3 NC_006151.1 + 59130 0.66 0.590055
Target:  5'- cUGCCgGUGgguGGCGcCCGCGGgcggguccAGGCCg- -3'
miRNA:   3'- aGCGGgCAC---UCGC-GGCGCU--------UCCGGag -5'
29407 5' -62.3 NC_006151.1 + 54373 0.66 0.584171
Target:  5'- -gGCCCGgGAcuggauggcgcaccuGCGCgCGCGc-GGCCUCg -3'
miRNA:   3'- agCGGGCaCU---------------CGCG-GCGCuuCCGGAG- -5'
29407 5' -62.3 NC_006151.1 + 136810 0.66 0.580255
Target:  5'- gCGCUCGcggccGAcGCGCCGCGcGGGCuCUg -3'
miRNA:   3'- aGCGGGCa----CU-CGCGGCGCuUCCG-GAg -5'
29407 5' -62.3 NC_006151.1 + 130367 0.66 0.580255
Target:  5'- aCGgCCGcGcGCGCCGCGGcguccagcgcgaAGGCCa- -3'
miRNA:   3'- aGCgGGCaCuCGCGGCGCU------------UCCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.