miRNA display CGI


Results 81 - 100 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29409 3' -64.1 NC_006151.1 + 104614 0.67 0.480852
Target:  5'- gCCGAgaucuGCCGCGcGCUCGaGGa--GGUGACg -3'
miRNA:   3'- -GGCU-----CGGCGC-CGAGC-CCgcgUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 20301 0.67 0.480852
Target:  5'- cCCGGgcgcccGCCGUGGCguuGGCGgCGGCGAg -3'
miRNA:   3'- -GGCU------CGGCGCCGagcCCGC-GUCGCUg -5'
29409 3' -64.1 NC_006151.1 + 115193 0.67 0.480852
Target:  5'- uCC-AGCCaGCGcGCcgCGGGCGCGcgcGCGAUc -3'
miRNA:   3'- -GGcUCGG-CGC-CGa-GCCCGCGU---CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 129216 0.67 0.498943
Target:  5'- -gGGGCCGCcagcaggcagcuGGCgCGGGUGCGccccucggugacGCGGCg -3'
miRNA:   3'- ggCUCGGCG------------CCGaGCCCGCGU------------CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 130406 0.67 0.498943
Target:  5'- gCCucGcCCGCGaGCgCGGGCGCGcCGACc -3'
miRNA:   3'- -GGcuC-GGCGC-CGaGCCCGCGUcGCUG- -5'
29409 3' -64.1 NC_006151.1 + 90382 0.67 0.508102
Target:  5'- gUCGAcGCCGCGGg-CGGGacggacagcaUGCAgGCGGCg -3'
miRNA:   3'- -GGCU-CGGCGCCgaGCCC----------GCGU-CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 79784 0.67 0.508102
Target:  5'- gCCGGaUCGCGGcCUC-GGCGCGGC-ACa -3'
miRNA:   3'- -GGCUcGGCGCC-GAGcCCGCGUCGcUG- -5'
29409 3' -64.1 NC_006151.1 + 54890 0.67 0.508102
Target:  5'- gCGAGCUGCucuuuGaCUCGccGGCGCAGCG-Cg -3'
miRNA:   3'- gGCUCGGCGc----C-GAGC--CCGCGUCGCuG- -5'
29409 3' -64.1 NC_006151.1 + 37860 0.67 0.508102
Target:  5'- cCCGGGCCGCGccgCGGacccccGCGCcggggaGGCGACc -3'
miRNA:   3'- -GGCUCGGCGCcgaGCC------CGCG------UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 19292 0.67 0.508102
Target:  5'- aCCgGGGCCaGCGGCgCGGGCGgcCGGUcGCc -3'
miRNA:   3'- -GG-CUCGG-CGCCGaGCCCGC--GUCGcUG- -5'
29409 3' -64.1 NC_006151.1 + 103676 0.67 0.508102
Target:  5'- gCGGcGCgCGCGGCggGGGUGCuGCG-Cg -3'
miRNA:   3'- gGCU-CG-GCGCCGagCCCGCGuCGCuG- -5'
29409 3' -64.1 NC_006151.1 + 64736 0.67 0.508102
Target:  5'- aCCGGGCCaCGaGCUCGa--GCAGCGGg -3'
miRNA:   3'- -GGCUCGGcGC-CGAGCccgCGUCGCUg -5'
29409 3' -64.1 NC_006151.1 + 4481 0.67 0.508102
Target:  5'- aUCGuAGCgGCGGCUCauggccacGGCGCucaccgcguGCGGCa -3'
miRNA:   3'- -GGC-UCGgCGCCGAGc-------CCGCGu--------CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 64868 0.67 0.508102
Target:  5'- -aGGGCCGCugcccGGCgggagcaGGGCcgcgaagagcacGCAGCGGCg -3'
miRNA:   3'- ggCUCGGCG-----CCGag-----CCCG------------CGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 136807 0.67 0.506264
Target:  5'- gCCGcGCuCGCGGCcgacgcgccgcgCGGGCuCuGCGACg -3'
miRNA:   3'- -GGCuCG-GCGCCGa-----------GCCCGcGuCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 11066 0.67 0.504429
Target:  5'- gCGGGCCacacuguGCGGCggaccgugccaaguUUaGGGCGCuGCGACc -3'
miRNA:   3'- gGCUCGG-------CGCCG--------------AG-CCCGCGuCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 54095 0.67 0.498943
Target:  5'- gCG-GCgGCGGCcaugUCGGcuGCGaCGGCGGCg -3'
miRNA:   3'- gGCuCGgCGCCG----AGCC--CGC-GUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 135152 0.67 0.498943
Target:  5'- aCCcAGCC-CGGC--GGGCGCGGCccgGACg -3'
miRNA:   3'- -GGcUCGGcGCCGagCCCGCGUCG---CUG- -5'
29409 3' -64.1 NC_006151.1 + 132143 0.67 0.498943
Target:  5'- gCCG-GCgGUGGUUgaCGGcGCGCAGCuGCg -3'
miRNA:   3'- -GGCuCGgCGCCGA--GCC-CGCGUCGcUG- -5'
29409 3' -64.1 NC_006151.1 + 67499 0.67 0.498943
Target:  5'- aCGAGCgCGCGGCUCgcguccGGGUcCAG-GGCc -3'
miRNA:   3'- gGCUCG-GCGCCGAG------CCCGcGUCgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.