miRNA display CGI


Results 101 - 120 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29409 3' -64.1 NC_006151.1 + 103676 0.67 0.508102
Target:  5'- gCGGcGCgCGCGGCggGGGUGCuGCG-Cg -3'
miRNA:   3'- gGCU-CG-GCGCCGagCCCGCGuCGCuG- -5'
29409 3' -64.1 NC_006151.1 + 19292 0.67 0.508102
Target:  5'- aCCgGGGCCaGCGGCgCGGGCGgcCGGUcGCc -3'
miRNA:   3'- -GG-CUCGG-CGCCGaGCCCGC--GUCGcUG- -5'
29409 3' -64.1 NC_006151.1 + 37860 0.67 0.508102
Target:  5'- cCCGGGCCGCGccgCGGacccccGCGCcggggaGGCGACc -3'
miRNA:   3'- -GGCUCGGCGCcgaGCC------CGCG------UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 54890 0.67 0.508102
Target:  5'- gCGAGCUGCucuuuGaCUCGccGGCGCAGCG-Cg -3'
miRNA:   3'- gGCUCGGCGc----C-GAGC--CCGCGUCGCuG- -5'
29409 3' -64.1 NC_006151.1 + 79784 0.67 0.508102
Target:  5'- gCCGGaUCGCGGcCUC-GGCGCGGC-ACa -3'
miRNA:   3'- -GGCUcGGCGCC-GAGcCCGCGUCGcUG- -5'
29409 3' -64.1 NC_006151.1 + 90382 0.67 0.508102
Target:  5'- gUCGAcGCCGCGGg-CGGGacggacagcaUGCAgGCGGCg -3'
miRNA:   3'- -GGCU-CGGCGCCgaGCCC----------GCGU-CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 54095 0.67 0.498943
Target:  5'- gCG-GCgGCGGCcaugUCGGcuGCGaCGGCGGCg -3'
miRNA:   3'- gGCuCGgCGCCG----AGCC--CGC-GUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 135152 0.67 0.498943
Target:  5'- aCCcAGCC-CGGC--GGGCGCGGCccgGACg -3'
miRNA:   3'- -GGcUCGGcGCCGagCCCGCGUCG---CUG- -5'
29409 3' -64.1 NC_006151.1 + 132143 0.67 0.498943
Target:  5'- gCCG-GCgGUGGUUgaCGGcGCGCAGCuGCg -3'
miRNA:   3'- -GGCuCGgCGCCGA--GCC-CGCGUCGcUG- -5'
29409 3' -64.1 NC_006151.1 + 55422 0.67 0.489858
Target:  5'- gCGcGCCGCGcaggCGGGCGCGGaCGGg -3'
miRNA:   3'- gGCuCGGCGCcga-GCCCGCGUC-GCUg -5'
29409 3' -64.1 NC_006151.1 + 100420 0.67 0.489858
Target:  5'- gCCGAcGCgggggcgcugCGCGGCgugauGGCGCAGaCGACg -3'
miRNA:   3'- -GGCU-CG----------GCGCCGagc--CCGCGUC-GCUG- -5'
29409 3' -64.1 NC_006151.1 + 122745 0.67 0.489858
Target:  5'- cCCGcgcGGCCGCGaGCUcgacaucaucgaCGGGCuGCucgugGGCGGCu -3'
miRNA:   3'- -GGC---UCGGCGC-CGA------------GCCCG-CG-----UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 78568 0.67 0.496209
Target:  5'- cCCGGGaggaCGCGGCgaCGGGCcuggaGCuggcggucaugaugAGCGACg -3'
miRNA:   3'- -GGCUCg---GCGCCGa-GCCCG-----CG--------------UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 94241 0.67 0.498943
Target:  5'- cUCGAGCuCG-GGCUCGcugaGCGCGGCcACg -3'
miRNA:   3'- -GGCUCG-GCgCCGAGCc---CGCGUCGcUG- -5'
29409 3' -64.1 NC_006151.1 + 103822 0.67 0.498943
Target:  5'- gCCGuGGCgGCGGCcguggagaugcUCGGGCgGCuGCGcGCg -3'
miRNA:   3'- -GGC-UCGgCGCCG-----------AGCCCG-CGuCGC-UG- -5'
29409 3' -64.1 NC_006151.1 + 118780 0.67 0.498943
Target:  5'- cCUGGacGCgGUGGCgCGcGGCGCGGCGcACc -3'
miRNA:   3'- -GGCU--CGgCGCCGaGC-CCGCGUCGC-UG- -5'
29409 3' -64.1 NC_006151.1 + 127449 0.67 0.498943
Target:  5'- -aGAGCCgGCGGCgcaCGaaGCGCugGGCGGCg -3'
miRNA:   3'- ggCUCGG-CGCCGa--GCc-CGCG--UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 129216 0.67 0.498943
Target:  5'- -gGGGCCGCcagcaggcagcuGGCgCGGGUGCGccccucggugacGCGGCg -3'
miRNA:   3'- ggCUCGGCG------------CCGaGCCCGCGU------------CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 130406 0.67 0.498943
Target:  5'- gCCucGcCCGCGaGCgCGGGCGCGcCGACc -3'
miRNA:   3'- -GGcuC-GGCGC-CGaGCCCGCGUcGCUG- -5'
29409 3' -64.1 NC_006151.1 + 67499 0.67 0.498943
Target:  5'- aCGAGCgCGCGGCUCgcguccGGGUcCAG-GGCc -3'
miRNA:   3'- gGCUCG-GCGCCGAG------CCCGcGUCgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.