miRNA display CGI


Results 121 - 140 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29409 3' -64.1 NC_006151.1 + 122745 0.67 0.489858
Target:  5'- cCCGcgcGGCCGCGaGCUcgacaucaucgaCGGGCuGCucgugGGCGGCu -3'
miRNA:   3'- -GGC---UCGGCGC-CGA------------GCCCG-CG-----UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 78568 0.67 0.496209
Target:  5'- cCCGGGaggaCGCGGCgaCGGGCcuggaGCuggcggucaugaugAGCGACg -3'
miRNA:   3'- -GGCUCg---GCGCCGa-GCCCG-----CG--------------UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 130406 0.67 0.498943
Target:  5'- gCCucGcCCGCGaGCgCGGGCGCGcCGACc -3'
miRNA:   3'- -GGcuC-GGCGC-CGaGCCCGCGUcGCUG- -5'
29409 3' -64.1 NC_006151.1 + 129216 0.67 0.498943
Target:  5'- -gGGGCCGCcagcaggcagcuGGCgCGGGUGCGccccucggugacGCGGCg -3'
miRNA:   3'- ggCUCGGCG------------CCGaGCCCGCGU------------CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 127449 0.67 0.498943
Target:  5'- -aGAGCCgGCGGCgcaCGaaGCGCugGGCGGCg -3'
miRNA:   3'- ggCUCGG-CGCCGa--GCc-CGCG--UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 118780 0.67 0.498943
Target:  5'- cCUGGacGCgGUGGCgCGcGGCGCGGCGcACc -3'
miRNA:   3'- -GGCU--CGgCGCCGaGC-CCGCGUCGC-UG- -5'
29409 3' -64.1 NC_006151.1 + 103822 0.67 0.498943
Target:  5'- gCCGuGGCgGCGGCcguggagaugcUCGGGCgGCuGCGcGCg -3'
miRNA:   3'- -GGC-UCGgCGCCG-----------AGCCCG-CGuCGC-UG- -5'
29409 3' -64.1 NC_006151.1 + 94241 0.67 0.498943
Target:  5'- cUCGAGCuCG-GGCUCGcugaGCGCGGCcACg -3'
miRNA:   3'- -GGCUCG-GCgCCGAGCc---CGCGUCGcUG- -5'
29409 3' -64.1 NC_006151.1 + 54798 0.68 0.44567
Target:  5'- aCGAGCCcCGGCaCcGGCGCGugcuggcgcGCGACg -3'
miRNA:   3'- gGCUCGGcGCCGaGcCCGCGU---------CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 64205 0.68 0.44567
Target:  5'- cCCGGGCaggucCGGCgUGGGCGCcuCGGCg -3'
miRNA:   3'- -GGCUCGgc---GCCGaGCCCGCGucGCUG- -5'
29409 3' -64.1 NC_006151.1 + 76179 0.68 0.44567
Target:  5'- gCGAGCUGCuGgaUGGcGCGCAGCcGCa -3'
miRNA:   3'- gGCUCGGCGcCgaGCC-CGCGUCGcUG- -5'
29409 3' -64.1 NC_006151.1 + 130267 0.68 0.44567
Target:  5'- gCCG-GCgCGCGGCcccgaggccgCGGGCGCGcGcCGGCc -3'
miRNA:   3'- -GGCuCG-GCGCCGa---------GCCCGCGU-C-GCUG- -5'
29409 3' -64.1 NC_006151.1 + 133321 0.68 0.44567
Target:  5'- cCCGuGUCGaGGCgcgcCGGGCggccgguuccGCGGCGGCg -3'
miRNA:   3'- -GGCuCGGCgCCGa---GCCCG----------CGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 136405 0.68 0.44567
Target:  5'- cCUGAGCgGCuacGCgCGGGgcccCGCGGCGGCg -3'
miRNA:   3'- -GGCUCGgCGc--CGaGCCC----GCGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 14158 0.68 0.454332
Target:  5'- -gGAGCCGCGccccGCUCGaGGaCGCccGGaCGACg -3'
miRNA:   3'- ggCUCGGCGC----CGAGC-CC-GCG--UC-GCUG- -5'
29409 3' -64.1 NC_006151.1 + 84815 0.68 0.454332
Target:  5'- aCCGcGGCCGCGGa-CGGG-GCcGCGAg -3'
miRNA:   3'- -GGC-UCGGCGCCgaGCCCgCGuCGCUg -5'
29409 3' -64.1 NC_006151.1 + 89997 0.68 0.454332
Target:  5'- gCCGcgcaGGCUGCGGgcgacguugUUCGuGGCGCAcGUGACg -3'
miRNA:   3'- -GGC----UCGGCGCC---------GAGC-CCGCGU-CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 3989 0.68 0.454332
Target:  5'- gCCG-GCCGCGGCcacgUUGGcCGgGGCGAa -3'
miRNA:   3'- -GGCuCGGCGCCG----AGCCcGCgUCGCUg -5'
29409 3' -64.1 NC_006151.1 + 85439 0.68 0.454332
Target:  5'- aCCGcGCCGCGGCcgccuuccUGGGCcGCGGCc-- -3'
miRNA:   3'- -GGCuCGGCGCCGa-------GCCCG-CGUCGcug -5'
29409 3' -64.1 NC_006151.1 + 5748 0.68 0.44567
Target:  5'- gCCGcGCCGcCGGCcCGGGCuCAcCGACc -3'
miRNA:   3'- -GGCuCGGC-GCCGaGCCCGcGUcGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.