miRNA display CGI


Results 81 - 100 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29409 3' -64.1 NC_006151.1 + 5539 0.72 0.262541
Target:  5'- aUCGAGCCgccucGCGGCggCGGGCucgucgaGCAGgGGCu -3'
miRNA:   3'- -GGCUCGG-----CGCCGa-GCCCG-------CGUCgCUG- -5'
29409 3' -64.1 NC_006151.1 + 96593 0.72 0.240281
Target:  5'- gCGAGgCGCcgGGCgCGGGCGCGcCGACg -3'
miRNA:   3'- gGCUCgGCG--CCGaGCCCGCGUcGCUG- -5'
29409 3' -64.1 NC_006151.1 + 96715 0.72 0.253787
Target:  5'- -gGGGCgGCGGCggacgaggaggcggCGGGCGCGaCGACg -3'
miRNA:   3'- ggCUCGgCGCCGa-------------GCCCGCGUcGCUG- -5'
29409 3' -64.1 NC_006151.1 + 88855 0.72 0.240281
Target:  5'- -gGAGCCGCucccgcggGaGCUcCGGGCGCGGgGGCu -3'
miRNA:   3'- ggCUCGGCG--------C-CGA-GCCCGCGUCgCUG- -5'
29409 3' -64.1 NC_006151.1 + 2782 0.72 0.257259
Target:  5'- gCgGAGCuCGCGGCaccCGGGC-CAGCGcACg -3'
miRNA:   3'- -GgCUCG-GCGCCGa--GCCCGcGUCGC-UG- -5'
29409 3' -64.1 NC_006151.1 + 64380 0.72 0.251493
Target:  5'- gUCGAgGCCGUGGCcagccCGcGGCGCAGCaGCg -3'
miRNA:   3'- -GGCU-CGGCGCCGa----GC-CCGCGUCGcUG- -5'
29409 3' -64.1 NC_006151.1 + 3244 0.72 0.263133
Target:  5'- gCGGcGCgGCGGCggagCgGGGCGCcGCGGCg -3'
miRNA:   3'- gGCU-CGgCGCCGa---G-CCCGCGuCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 96209 0.72 0.263133
Target:  5'- gCCGcgucGCCGUGGCggCGGcCGCGGCGAg -3'
miRNA:   3'- -GGCu---CGGCGCCGa-GCCcGCGUCGCUg -5'
29409 3' -64.1 NC_006151.1 + 49899 0.72 0.245834
Target:  5'- uCCGu-CCGUGgacgaGCUCGGGCGCcGGCGGCu -3'
miRNA:   3'- -GGCucGGCGC-----CGAGCCCGCG-UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 9487 0.72 0.257259
Target:  5'- cCCGcGGCCGCGGCgUGGGagaGCGG-GGCg -3'
miRNA:   3'- -GGC-UCGGCGCCGaGCCCg--CGUCgCUG- -5'
29409 3' -64.1 NC_006151.1 + 19055 0.72 0.257259
Target:  5'- aCCGGG-CGCaGGCacUCGGGCGCGcGCGGg -3'
miRNA:   3'- -GGCUCgGCG-CCG--AGCCCGCGU-CGCUg -5'
29409 3' -64.1 NC_006151.1 + 68044 0.71 0.275207
Target:  5'- gCCGGcGCgGCGGgCaCGGGCuCGGCGACg -3'
miRNA:   3'- -GGCU-CGgCGCC-GaGCCCGcGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 5027 0.71 0.300676
Target:  5'- uCCgGGGCCGgGGC-CGGGgaggcCGCGGCGGa -3'
miRNA:   3'- -GG-CUCGGCgCCGaGCCC-----GCGUCGCUg -5'
29409 3' -64.1 NC_006151.1 + 122373 0.71 0.300676
Target:  5'- aCGGGCuCGacgaGGCgcgccgCGGGCGCgcgcuGGCGGCg -3'
miRNA:   3'- gGCUCG-GCg---CCGa-----GCCCGCG-----UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 4221 0.71 0.300676
Target:  5'- gCCGGGgCGCGGg-CGGGCGCgggcagccggAGCGGg -3'
miRNA:   3'- -GGCUCgGCGCCgaGCCCGCG----------UCGCUg -5'
29409 3' -64.1 NC_006151.1 + 113611 0.71 0.26731
Target:  5'- gCCGAGCgccaggcggacccgCGCGuGCUCuuuGaGCGCGGCGACg -3'
miRNA:   3'- -GGCUCG--------------GCGC-CGAGc--C-CGCGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 3942 0.71 0.300676
Target:  5'- gCCGGGCgcgggcucCGCgGGCcCGGGCcgcGCGGCGGCc -3'
miRNA:   3'- -GGCUCG--------GCG-CCGaGCCCG---CGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 118431 0.71 0.267911
Target:  5'- aCGGGCgcggaggugugcgCGCGGCUCGGccuggccgcggacGCGCAcGCGGCc -3'
miRNA:   3'- gGCUCG-------------GCGCCGAGCC-------------CGCGU-CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 68830 0.71 0.300676
Target:  5'- cCCGcGCCgGCGuguGCUCGaGGCGCcgcGCGACg -3'
miRNA:   3'- -GGCuCGG-CGC---CGAGC-CCGCGu--CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 91748 0.71 0.275207
Target:  5'- gCGGGCgaGCgGGCUCGGGCG-GGCGGu -3'
miRNA:   3'- gGCUCGg-CG-CCGAGCCCGCgUCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.