miRNA display CGI


Results 101 - 120 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29409 3' -64.1 NC_006151.1 + 3942 0.71 0.300676
Target:  5'- gCCGGGCgcgggcucCGCgGGCcCGGGCcgcGCGGCGGCc -3'
miRNA:   3'- -GGCUCG--------GCG-CCGaGCCCG---CGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 5027 0.71 0.300676
Target:  5'- uCCgGGGCCGgGGC-CGGGgaggcCGCGGCGGa -3'
miRNA:   3'- -GG-CUCGGCgCCGaGCCC-----GCGUCGCUg -5'
29409 3' -64.1 NC_006151.1 + 69966 0.71 0.269116
Target:  5'- cCCgGGGCCGCG---CGGGCGCugcAGCGGCg -3'
miRNA:   3'- -GG-CUCGGCGCcgaGCCCGCG---UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 122373 0.71 0.300676
Target:  5'- aCGGGCuCGacgaGGCgcgccgCGGGCGCgcgcuGGCGGCg -3'
miRNA:   3'- gGCUCG-GCg---CCGa-----GCCCGCG-----UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 68044 0.71 0.275207
Target:  5'- gCCGGcGCgGCGGgCaCGGGCuCGGCGACg -3'
miRNA:   3'- -GGCU-CGgCGCC-GaGCCCGcGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 31685 0.71 0.287084
Target:  5'- gCCGGGCCGCcgagccGGCcgcgccaUUGGGCGCcgGGCGGa -3'
miRNA:   3'- -GGCUCGGCG------CCG-------AGCCCGCG--UCGCUg -5'
29409 3' -64.1 NC_006151.1 + 82114 0.71 0.277674
Target:  5'- gCCGAGCguguacacguggaaGCGGCccgCGGGCGggccCGGCGGCu -3'
miRNA:   3'- -GGCUCGg-------------CGCCGa--GCCCGC----GUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 20126 0.71 0.281409
Target:  5'- nCgGGGCUGgGGggCGGGCGCcgcgggGGCGGCg -3'
miRNA:   3'- -GgCUCGGCgCCgaGCCCGCG------UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 66520 0.71 0.281409
Target:  5'- gCCGGGCuCGCGcgcgccgcGCUCuucggGGGCGCGcGCGGCc -3'
miRNA:   3'- -GGCUCG-GCGC--------CGAG-----CCCGCGU-CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 71948 0.71 0.287084
Target:  5'- gCGAGCgCGUGGCcgccucggcguugUCGcGGUGCGGCGGg -3'
miRNA:   3'- gGCUCG-GCGCCG-------------AGC-CCGCGUCGCUg -5'
29409 3' -64.1 NC_006151.1 + 118431 0.71 0.267911
Target:  5'- aCGGGCgcggaggugugcgCGCGGCUCGGccuggccgcggacGCGCAcGCGGCc -3'
miRNA:   3'- gGCUCG-------------GCGCCGAGCC-------------CGCGU-CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 49250 0.71 0.294143
Target:  5'- gCUGGG-CGCGGCUCGuGCGCgccgucguccAGCGGCu -3'
miRNA:   3'- -GGCUCgGCGCCGAGCcCGCG----------UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 130848 0.71 0.293495
Target:  5'- gUCGucGCCGuCGGCggcgCGGGCgggaccgcaguggGCGGCGGCg -3'
miRNA:   3'- -GGCu-CGGC-GCCGa---GCCCG-------------CGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 141391 0.71 0.290276
Target:  5'- cCCGGGCaaacaGCGGCguguccggcgaucggUgCGGGCGCGGCccGGCg -3'
miRNA:   3'- -GGCUCGg----CGCCG---------------A-GCCCGCGUCG--CUG- -5'
29409 3' -64.1 NC_006151.1 + 68830 0.71 0.300676
Target:  5'- cCCGcGCCgGCGuguGCUCGaGGCGCcgcGCGACg -3'
miRNA:   3'- -GGCuCGG-CGC---CGAGC-CCGCGu--CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 30744 0.71 0.294143
Target:  5'- cCCGGaguGCCGCgGGCggggCGGGgGCAGCa-- -3'
miRNA:   3'- -GGCU---CGGCG-CCGa---GCCCgCGUCGcug -5'
29409 3' -64.1 NC_006151.1 + 36187 0.71 0.28772
Target:  5'- gCCccGCCGgGGCUCGGGCGagaucguggugcUAGaCGACg -3'
miRNA:   3'- -GGcuCGGCgCCGAGCCCGC------------GUC-GCUG- -5'
29409 3' -64.1 NC_006151.1 + 113611 0.71 0.26731
Target:  5'- gCCGAGCgccaggcggacccgCGCGuGCUCuuuGaGCGCGGCGACg -3'
miRNA:   3'- -GGCUCG--------------GCGC-CGAGc--C-CGCGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 131857 0.71 0.274593
Target:  5'- gCCGAgacgcgcGCCgGCGGCgUCGGGuCGCAG-GGCa -3'
miRNA:   3'- -GGCU-------CGG-CGCCG-AGCCC-GCGUCgCUG- -5'
29409 3' -64.1 NC_006151.1 + 103468 0.71 0.275207
Target:  5'- gCCGGGCaCG-GuGCUCGcGGCGCuGUGGCg -3'
miRNA:   3'- -GGCUCG-GCgC-CGAGC-CCGCGuCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.