miRNA display CGI


Results 61 - 80 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29409 3' -64.1 NC_006151.1 + 105546 0.73 0.229489
Target:  5'- cCCGAGCUGCGGCacgacgcccugCGcGCGCuGGCGGCc -3'
miRNA:   3'- -GGCUCGGCGCCGa----------GCcCGCG-UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 90624 0.73 0.229489
Target:  5'- cCCGAG--GCGGCccgCGGGCGCuuGGCGAUg -3'
miRNA:   3'- -GGCUCggCGCCGa--GCCCGCG--UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 114898 0.72 0.234833
Target:  5'- cCCGGGCgCGaGGCcCGGGCGCA-CGGCc -3'
miRNA:   3'- -GGCUCG-GCgCCGaGCCCGCGUcGCUG- -5'
29409 3' -64.1 NC_006151.1 + 78331 0.72 0.234833
Target:  5'- aCGAgcGCCcCGGggCGGGCGCGgGCGACg -3'
miRNA:   3'- gGCU--CGGcGCCgaGCCCGCGU-CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 70069 0.72 0.234833
Target:  5'- cCCGAGCCGUGGUagcgCGucuGCGCgugGGCGGCg -3'
miRNA:   3'- -GGCUCGGCGCCGa---GCc--CGCG---UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 118872 0.72 0.234833
Target:  5'- uUGAGCaGCGGC---GGCGCGGCGGCg -3'
miRNA:   3'- gGCUCGgCGCCGagcCCGCGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 32568 0.72 0.234833
Target:  5'- cCCGGGCaccCGCGGC-CGGGCGgAGgGGg -3'
miRNA:   3'- -GGCUCG---GCGCCGaGCCCGCgUCgCUg -5'
29409 3' -64.1 NC_006151.1 + 66943 0.72 0.234833
Target:  5'- -aGGGCaaagGCGGCggCGGGCGCGGC-ACg -3'
miRNA:   3'- ggCUCGg---CGCCGa-GCCCGCGUCGcUG- -5'
29409 3' -64.1 NC_006151.1 + 26825 0.72 0.234833
Target:  5'- aCCGAGCCGCGGaagcuaaaCUCGGacGCGaCGGUGGu -3'
miRNA:   3'- -GGCUCGGCGCC--------GAGCC--CGC-GUCGCUg -5'
29409 3' -64.1 NC_006151.1 + 96593 0.72 0.240281
Target:  5'- gCGAGgCGCcgGGCgCGGGCGCGcCGACg -3'
miRNA:   3'- gGCUCgGCG--CCGaGCCCGCGUcGCUG- -5'
29409 3' -64.1 NC_006151.1 + 136984 0.72 0.240281
Target:  5'- gCCGcGCCG-GGCggCGGGCGCGcGCGcACg -3'
miRNA:   3'- -GGCuCGGCgCCGa-GCCCGCGU-CGC-UG- -5'
29409 3' -64.1 NC_006151.1 + 29059 0.72 0.240281
Target:  5'- cUCGAGuuGgCGGCgccgCGGGCcccgagacggccGCGGCGACc -3'
miRNA:   3'- -GGCUCggC-GCCGa---GCCCG------------CGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 74311 0.72 0.240281
Target:  5'- cUCGGcGUCGUGGUgCGGGUGCAGgGGCu -3'
miRNA:   3'- -GGCU-CGGCGCCGaGCCCGCGUCgCUG- -5'
29409 3' -64.1 NC_006151.1 + 88855 0.72 0.240281
Target:  5'- -gGAGCCGCucccgcggGaGCUcCGGGCGCGGgGGCu -3'
miRNA:   3'- ggCUCGGCG--------C-CGA-GCCCGCGUCgCUG- -5'
29409 3' -64.1 NC_006151.1 + 106496 0.72 0.244157
Target:  5'- aCGGGCCaGCGGCUggcgcgcgccgugcCGGGCGCGcUGGCc -3'
miRNA:   3'- gGCUCGG-CGCCGA--------------GCCCGCGUcGCUG- -5'
29409 3' -64.1 NC_006151.1 + 77922 0.72 0.245834
Target:  5'- aCG-GCCGUGGUggugaagggCGGGCGC-GCGGCc -3'
miRNA:   3'- gGCuCGGCGCCGa--------GCCCGCGuCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 49899 0.72 0.245834
Target:  5'- uCCGu-CCGUGgacgaGCUCGGGCGCcGGCGGCu -3'
miRNA:   3'- -GGCucGGCGC-----CGAGCCCGCG-UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 121086 0.72 0.245834
Target:  5'- aCGGGCgGCGGCgcCGGGCuGCA-CGACc -3'
miRNA:   3'- gGCUCGgCGCCGa-GCCCG-CGUcGCUG- -5'
29409 3' -64.1 NC_006151.1 + 36935 0.72 0.251493
Target:  5'- gCCGcGGCCGCGGCUUcaGCagcuccagcaGCAGCGGCa -3'
miRNA:   3'- -GGC-UCGGCGCCGAGccCG----------CGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 64380 0.72 0.251493
Target:  5'- gUCGAgGCCGUGGCcagccCGcGGCGCAGCaGCg -3'
miRNA:   3'- -GGCU-CGGCGCCGa----GC-CCGCGUCGcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.