miRNA display CGI


Results 121 - 140 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29409 3' -64.1 NC_006151.1 + 4221 0.71 0.300676
Target:  5'- gCCGGGgCGCGGg-CGGGCGCgggcagccggAGCGGg -3'
miRNA:   3'- -GGCUCgGCGCCgaGCCCGCG----------UCGCUg -5'
29409 3' -64.1 NC_006151.1 + 18673 0.7 0.307322
Target:  5'- uCCG-GCCGUacgGGUUccaCGGGCGCgcgGGCGGCg -3'
miRNA:   3'- -GGCuCGGCG---CCGA---GCCCGCG---UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 141153 0.7 0.307322
Target:  5'- aCGAGCaccaucggGCGGUcuUCGGG-GUAGCGGCa -3'
miRNA:   3'- gGCUCGg-------CGCCG--AGCCCgCGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 133467 0.7 0.307322
Target:  5'- gUCGAgGCCcgcgagGCGGCcgCGGGCGUcaccuuGGCGGCg -3'
miRNA:   3'- -GGCU-CGG------CGCCGa-GCCCGCG------UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 117767 0.7 0.314078
Target:  5'- gCCG-GCCGagguauaGGCUcCGGGCGgGGCGcCa -3'
miRNA:   3'- -GGCuCGGCg------CCGA-GCCCGCgUCGCuG- -5'
29409 3' -64.1 NC_006151.1 + 103058 0.7 0.314078
Target:  5'- gCCGAGgCGCaGGCgcaCGGGCaccuGgAGCGGCg -3'
miRNA:   3'- -GGCUCgGCG-CCGa--GCCCG----CgUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 117187 0.7 0.316812
Target:  5'- -aGGGCCGCcggggGGCgucguaguaguagaCGGGCGCGGCGuCg -3'
miRNA:   3'- ggCUCGGCG-----CCGa-------------GCCCGCGUCGCuG- -5'
29409 3' -64.1 NC_006151.1 + 26360 0.7 0.320255
Target:  5'- gCGGGCCGCGuCg-GGGCGCgcgucccccggcgGGCGGCg -3'
miRNA:   3'- gGCUCGGCGCcGagCCCGCG-------------UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 61235 0.7 0.320255
Target:  5'- cCCGAGCCcaucggaGCGcGCgccaCGaGGaCGCGGCGGCa -3'
miRNA:   3'- -GGCUCGG-------CGC-CGa---GC-CC-GCGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 98198 0.7 0.320947
Target:  5'- gUCGcGCCGCgcgGGgUCGaGuGCGCGGCGGCg -3'
miRNA:   3'- -GGCuCGGCG---CCgAGC-C-CGCGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 4907 0.7 0.320947
Target:  5'- gCCGGGCCaG-GGCUCcccgagcgGGGUgaGCAGCGGCc -3'
miRNA:   3'- -GGCUCGG-CgCCGAG--------CCCG--CGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 5234 0.7 0.320947
Target:  5'- gCCGAGCgccgCGCGGCggcggCGGGgGCccgGGgGGCg -3'
miRNA:   3'- -GGCUCG----GCGCCGa----GCCCgCG---UCgCUG- -5'
29409 3' -64.1 NC_006151.1 + 59353 0.7 0.320947
Target:  5'- -aGGGCCGCGcGCacgGGGCGCcgcGCGGCc -3'
miRNA:   3'- ggCUCGGCGC-CGag-CCCGCGu--CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 66761 0.7 0.320947
Target:  5'- gCGAcGCCGCGacggccgccCUCGGGacgGCGGCGGCg -3'
miRNA:   3'- gGCU-CGGCGCc--------GAGCCCg--CGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 95297 0.7 0.320947
Target:  5'- gCGAcGCgCGCGGC-CcGGCGCAGCGcgGCa -3'
miRNA:   3'- gGCU-CG-GCGCCGaGcCCGCGUCGC--UG- -5'
29409 3' -64.1 NC_006151.1 + 130819 0.7 0.320947
Target:  5'- uCCGGGUC-CcGCUCGaGGCGCGGCG-Cg -3'
miRNA:   3'- -GGCUCGGcGcCGAGC-CCGCGUCGCuG- -5'
29409 3' -64.1 NC_006151.1 + 100664 0.7 0.327928
Target:  5'- aCGAG-CGCGGCgugCuGGCGCucgucGCGACg -3'
miRNA:   3'- gGCUCgGCGCCGa--GcCCGCGu----CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 107004 0.7 0.327928
Target:  5'- gCCGcAGCUggaGCGGCUCucGGCGCugaucGCGGCg -3'
miRNA:   3'- -GGC-UCGG---CGCCGAGc-CCGCGu----CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 128036 0.7 0.327928
Target:  5'- gCGAcGcCCGCGGCagCGGcG-GCAGCGGCg -3'
miRNA:   3'- gGCU-C-GGCGCCGa-GCC-CgCGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 104034 0.7 0.327928
Target:  5'- -gGAGCgCGCGcagcgccaGCUCuGGGCGCGcGCGGCc -3'
miRNA:   3'- ggCUCG-GCGC--------CGAG-CCCGCGU-CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.