miRNA display CGI


Results 101 - 120 of 399 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29409 3' -64.1 NC_006151.1 + 74115 0.67 0.480852
Target:  5'- gCGAGuuG-GGCacgagguugcgCGGGUGCAGCGGg -3'
miRNA:   3'- gGCUCggCgCCGa----------GCCCGCGUCGCUg -5'
29409 3' -64.1 NC_006151.1 + 21342 0.67 0.480852
Target:  5'- -gGGGuCCGCGGCUggaacggcuccgCGGGCuGCGGCcACc -3'
miRNA:   3'- ggCUC-GGCGCCGA------------GCCCG-CGUCGcUG- -5'
29409 3' -64.1 NC_006151.1 + 4084 0.67 0.480852
Target:  5'- gCGGcGCCaCGGUgCGGGCGacgagGGCGACa -3'
miRNA:   3'- gGCU-CGGcGCCGaGCCCGCg----UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 11809 0.67 0.480852
Target:  5'- gCGGGgUGgGGUg-GGGgGCGGCGGCg -3'
miRNA:   3'- gGCUCgGCgCCGagCCCgCGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 63456 0.67 0.480852
Target:  5'- gUCGAGCgucCGGUUCugcucgcagGGGCgGCGGCGGCg -3'
miRNA:   3'- -GGCUCGgc-GCCGAG---------CCCG-CGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 68943 0.67 0.480852
Target:  5'- uCUGGcGCaugCGCGGCUCGcGGCGCAcgGACu -3'
miRNA:   3'- -GGCU-CG---GCGCCGAGC-CCGCGUcgCUG- -5'
29409 3' -64.1 NC_006151.1 + 78663 0.67 0.480852
Target:  5'- gCG-GCCGgGGCgCGGGUGCuG-GACg -3'
miRNA:   3'- gGCuCGGCgCCGaGCCCGCGuCgCUG- -5'
29409 3' -64.1 NC_006151.1 + 91679 0.67 0.480852
Target:  5'- gCCGGGUgGUGcGCgUGGGUGgGGUGGCg -3'
miRNA:   3'- -GGCUCGgCGC-CGaGCCCGCgUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 115193 0.67 0.480852
Target:  5'- uCC-AGCCaGCGcGCcgCGGGCGCGcgcGCGAUc -3'
miRNA:   3'- -GGcUCGG-CGC-CGa-GCCCGCGU---CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 20301 0.67 0.480852
Target:  5'- cCCGGgcgcccGCCGUGGCguuGGCGgCGGCGAg -3'
miRNA:   3'- -GGCU------CGGCGCCGagcCCGC-GUCGCUg -5'
29409 3' -64.1 NC_006151.1 + 104614 0.67 0.480852
Target:  5'- gCCGAgaucuGCCGCGcGCUCGaGGa--GGUGACg -3'
miRNA:   3'- -GGCU-----CGGCGC-CGAGC-CCgcgUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 117029 0.67 0.480852
Target:  5'- cCCGGGCCGCaGGCgguaccagccgaagcUGGGCaggucguggucgaGCAGCaGGCg -3'
miRNA:   3'- -GGCUCGGCG-CCGa--------------GCCCG-------------CGUCG-CUG- -5'
29409 3' -64.1 NC_006151.1 + 81384 0.67 0.479955
Target:  5'- gCGAGCCGC-GC-CGcGGCGCccagguuggccagGGUGGCg -3'
miRNA:   3'- gGCUCGGCGcCGaGC-CCGCG-------------UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 6388 0.67 0.475486
Target:  5'- cCUGAGCga-GGC-CGGGCGCcgagcgcggagagcgGGCGGCg -3'
miRNA:   3'- -GGCUCGgcgCCGaGCCCGCG---------------UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 69697 0.67 0.471926
Target:  5'- gCCGucgaugguGGCCGCcGC-CGGGgGCAGCaGCg -3'
miRNA:   3'- -GGC--------UCGGCGcCGaGCCCgCGUCGcUG- -5'
29409 3' -64.1 NC_006151.1 + 52380 0.67 0.471926
Target:  5'- cCCGGGgcCCGCGGgggcggCGGGCGCcGCcGCg -3'
miRNA:   3'- -GGCUC--GGCGCCga----GCCCGCGuCGcUG- -5'
29409 3' -64.1 NC_006151.1 + 6076 0.67 0.471926
Target:  5'- cCCGAGCCcCGGCg-GGGCuGCuGCuGCu -3'
miRNA:   3'- -GGCUCGGcGCCGagCCCG-CGuCGcUG- -5'
29409 3' -64.1 NC_006151.1 + 2333 0.67 0.471926
Target:  5'- gCG-GCCuCGGCgUCGGGCuccaGCAGCGcCg -3'
miRNA:   3'- gGCuCGGcGCCG-AGCCCG----CGUCGCuG- -5'
29409 3' -64.1 NC_006151.1 + 133154 0.67 0.471926
Target:  5'- cUCG-GCgGCGGCgCGGGCGUGGgccuCGGCc -3'
miRNA:   3'- -GGCuCGgCGCCGaGCCCGCGUC----GCUG- -5'
29409 3' -64.1 NC_006151.1 + 139653 0.67 0.471926
Target:  5'- -gGGGUCGCGGC--GGGCGCGccgccCGACa -3'
miRNA:   3'- ggCUCGGCGCCGagCCCGCGUc----GCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.